| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3118247 | 62 (1.230) | 3 (0.060) | 3/246 | NT | 5.3% | coding (335/1188 nt) | cfa | cyclopropane‑fatty‑acyl‑phospholipid synthase |
| ? | NC_002947 | = 3118286 | 49 (1.020) | coding (296/1188 nt) | cfa | cyclopropane‑fatty‑acyl‑phospholipid synthase | |||||
AGCTTCTGGCAGATGCGCTCCAGCTTGTGCAACTGGGCCTGCTCCAGTGTTTGCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3118094‑3118247‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgccTGCTGCACCGGCTCAACCGCAACGACAAGCGCGGCGCCCGGCGCAACATTCTGGCCCACTACGACCTGGGCAATGCCCTGTTCGAGCGGCTGCTGGACCCCACCATGATGTATTCGGCTGCGCAATTCGAACACCCGGGGCAAACACT < NC_002947/3118286‑3118139 AGCTTCTGGCAGATGCGCTCCAGCTTGTGCAACTGGGCCTGCTCCAGTGTTTGCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTT > 3:32894/1‑149AGCTTCTGGCAGATGCGCTCCAGCTTGTGCAACTGGGCCTGCTCCAGTGTTTGCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTT > 8:76176/1‑149 GCCTGCTCCAGTGTTTGCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCACTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCTGCTGCACCGGCTCAACCGCAACGACAAGCG < 4:76680/149‑1 ATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCTGCTGCACCGGCTCAACCGCAACGACAAGCGCGGCGCCCGGCGCAAC > 1:168367/1‑121 ATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCTGCTGCACCGGCTCAACCGCAACGACAAGCGCGGCGCCCGGCGCAAC < 2:168367/121‑1 TGCGCCTGCTGCACCGGCTCAACCGCAACGACAAGCGCGGCGCCCGGCGCAACATTCTGGCCCACTACGACCTGGGCAATGCCCTGTTCGAGC > 7:217949/1‑93 TGCGCCTGCTGCACCGGCTCAACCGCAACGACAAGCGCGGCGCCCGGCGCAACATTCTGGCCCACTACGACCTGGGCAATGCCCTGTTCGAGC < 8:217949/93‑1 CCTGCTGCACCGGCTCAACCGCAACGACAAGCGCGGCGCCCGGCGCAACATTCTGGCCCACTACGACCTGGGCAATGCCCTGTTCGAGCGGCTGCTGGACCCCACCATGATGTATTCGGCTGCGCAATTCGAACACCCGGGGCAAACAC > 6:327969/1‑149 CCTGCTGCACCGGCTCAACCGCAACGACAAGCGCGGCGCCCGGCGCAACATTCTGGCCCACTACGACCTGGGCAATGCCCTGTTCGAGCGGCTGCTGGACCCCACCATGA < 3:236359/110‑1 CCTGCTGCACCGGCTCAACCGCAACGACAAGCGCGGCGCCCGGCGCAACATTCTGGCCCACTACGACCTGGGCAATGCCCTGTTCGAGCGGCTGCTGGACCCCACCATGA > 4:236359/1‑110 CTGCTGCACCGGCTCAACCGCAACGACAAGCGCGGCGCCCGGCGCAACATTCTGGCCCACTACGACCTGGGCAATGCCCTGTTCGAGCGGCTGCTGGACCCCACCATGATGTATTCGGCTGCGCAATTCGAACACCCGGGGCAAACACT < 5:327969/149‑1 AGCTTCTGGCAGATGCGCTCCAGCTTGTGCAACTGGGCCTGCTCCAGTGTTTGCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3118094‑3118247‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgccTGCTGCACCGGCTCAACCGCAACGACAAGCGCGGCGCCCGGCGCAACATTCTGGCCCACTACGACCTGGGCAATGCCCTGTTCGAGCGGCTGCTGGACCCCACCATGATGTATTCGGCTGCGCAATTCGAACACCCGGGGCAAACACT < NC_002947/3118286‑3118139 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |