New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3838318	39 (0.770)	3 (0.060)	3/252	NT	7.3%	coding (1913/2673 nt)	PP_3388	hypothetical protein
	?	NC_002947	= 3838342	NA (NA)					coding (1937/2673 nt)	PP_3388	hypothetical protein

TTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3838169‑3838318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATCGAC  <  NC_002947/3838342‑3838197                                                                                                                                                                                                                                                                                                          TTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGG                                                                                                                                                      >  5:166814/1‑148                                    TTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCC                                                                                                                   <  2:199086/148‑1                                                         GTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCT                                                                                                                  >  7:173588/1‑128                                                         GTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCT                                                                                                                  <  8:173588/128‑1                                                                                                                                                 ccttAAACACTCTCTTTGTAGAAGTGACTTTTCCGGGACTGCATCAACCCTTGAGCCCAAGCCTGGTCGAGGTACCTTGATTCCTGGCATGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATAT      <  4:189609/144‑1                                                                                                                                                   GGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATCGA   <  2:190013/149‑1                                                                                                                                                    GAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATCGAC  <  8:79017/149‑1                                                                                                                                                    GAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGC                                     >  1:322891/1‑114                                                                                                                                                    GAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGC                                     <  2:322891/114‑1                                                                                                                                                     AAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGTATATCGA   >  4:199602/1‑147                                                                                                                                                                                                                                                                                                          TTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3838169‑3838318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATCGAC  <  NC_002947/3838342‑3838197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.