| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3838318 | 39 (0.770) | 3 (0.060) | 3/252 | NT | 7.3% | coding (1913/2673 nt) | PP_3388 | hypothetical protein |
| ? | NC_002947 | = 3838342 | NA (NA) | coding (1937/2673 nt) | PP_3388 | hypothetical protein | |||||
TCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGATGACTACGGCTGCGGCGG > NC_002947/3838198‑3838464 | tCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCt < 6:322341/149‑1 (MQ=11)tCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCt < 3:112917/149‑1 (MQ=11) ttCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAAacacgcactttgtagaagtcactgttccgggcc < 2:199086‑M1/148‑34 (MQ=255) cGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTgg < 7:79017/148‑1 (MQ=33) tGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGc > 1:56356/1‑149 (MQ=34) aaGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCctgctg > 2:45669/1‑149 (MQ=34) cACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAgg < 3:286973/147‑1 (MQ=34) gTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAAacacgcactttgtagaagtcactgttccgggcct < 8:173588‑M1/128‑35 (MQ=255) gTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAAacacgcactttgtagaagtcactgttccgggcct > 7:173588‑M1/1‑94 (MQ=255) aGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAggg > 1:89717/1‑143 (MQ=34) aGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAggg < 2:89717/143‑1 (MQ=34) gggCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGAt < 4:175137/149‑1 (MQ=34) aGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGcc < 2:56356/149‑1 (MQ=34) cATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTc > 6:105262/1‑148 (MQ=34) aaCCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAgc > 6:242951/1‑149 (MQ=34) gacaACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGGTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAgcgcgc < 7:181371/148‑1 (MQ=21) cacaACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCtt > 8:14165/1‑139 (MQ=34) cacaACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCtt < 7:14165/139‑1 (MQ=34) acaACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAgcgcgc > 5:278256/1‑148 (MQ=34) agcgcagGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGcc < 8:187440/149‑1 (MQ=37) cgcagGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCt > 5:269992/1‑148 (MQ=37) gCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGc < 3:113376/98‑1 (MQ=37) gCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGc > 4:113376/1‑98 (MQ=37) aaGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCTGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTTGTGAGCCTGCAGGAGGGGATGCTGATCGCCTTCAAAGCGCTCGAATTGCCTGACAGTGa > 5:140246/2‑149 (MQ=11) aTCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATgcgc > 2:30500/1‑149 (MQ=37) aaGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGa > 1:214344/1‑96 (MQ=37) aaGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGa < 2:214344/96‑1 (MQ=37) aaGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCggg > 3:141021/1‑149 (MQ=37) tACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGaa < 6:111963/149‑1 (MQ=37) tCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGc > 4:102020/1‑123 (MQ=38) tCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGc < 3:102020/123‑1 (MQ=38) tCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGAcc > 8:133271/1‑149 (MQ=37) tCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTATGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCATGACAGTGATGCGCGCTTGAAGAcc > 5:1249/1‑149 (MQ=255) cGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGAcc > 8:91708/1‑148 (MQ=37) aCCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGaa > 6:147381/1‑149 (MQ=37) aCCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTCCCTGACAGTGATGCGCGGGTGAAGACCGaa < 1:30500/149‑1 (MQ=37) gggTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGAt < 6:278256/149‑1 (MQ=39) gCAGGCACGGAACAGTGACTTCTAAAAAGTGCGTGTTTCTGGTCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAATCGCGAGAATTGCCTGACAGTGATGCGCGGGTGAACACCGAACTTCTGGCGGCCGCGATGACTACg > 6:134689/1‑148 (MQ=14) aGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGa > 7:189677/1‑138 (MQ=40) aGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGa < 8:189677/138‑1 (MQ=40) cccGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGATGACTACGGCTgcg < 5:147381/149‑1 (MQ=39) ccttaaacactctctttgtagaagtgacttttccgggactgcatcaacccttgagcccaagcctggtcgaggtaccttgattcctggcatgcgctgcgttgtgggttgatgggctgcccgctacgtgcagcttcactcaggcgaatat < 4:189609‑M1/144‑143 (MQ=255) ccGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGATGACTACGGCTgcgg > 7:197683/1‑149 (MQ=39) ggAAacacgcactttgtagaagtcactgttccgggcctgcatcaacccttcagcccaagcctggtcgaggtaccttgatacctggcctgcgctgcgttgtgggttgatgggctgcccgctacgtgcagcttcactcaggcgaatatcga < 2:190013‑M1/149‑146 (MQ=255) ggAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGATGACTACGGCTgcggcg > 3:80653/1‑149 (MQ=39) gAAacacgcactttgtagaagtcactgttccgggcctgcatcaacccttcagcccaagcctggtcgaggtaccttgatacctggcctgcgctgcgttgtgggttgatgggctgcccgctacgtgcagcttcactcaggcgaatatcgac < 8:79017‑M1/149‑147 (MQ=255) gAAacacgcactttgtagaagtcactgttccgggcctgcatcaacccttcagcccaagcctggtcgaggtaccttgatacctggcctgcgctgcgttgtgggttgatgggctgc < 2:322891‑M1/114‑112 (MQ=255) gAAacacgcactttgtagaagtcactgttccgggcctgcatcaacccttcagcccaagcctggtcgaggtaccttgatacctggcctgcgctgcgttgtgggttgatgggctgc > 1:322891‑M1/1‑3 (MQ=255) gAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGATGACTACGGCTGcggcgg < 4:11936/149‑1 (MQ=39) aaacacgcactttgtagaagtcactgttccgggcctgcatcaacccttcagcccaagcctggtcgaggtaccttgatacctggcctgcgctgcgttgtgggttgatgggctgcccgctacgtgcagcttcactcaggcgtatatcga > 4:199602‑M1/1‑2 (MQ=255) | TCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGCGAATTGCCTGACAGTGATGCGCGGGTGAAGACCGAACTTCTGGCGGCCGCGATGACTACGGCTGCGGCGG > NC_002947/3838198‑3838464 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |