New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3893029 =	54 (1.070)	3 (0.060)	3/244	NT	5.6%	coding (393/888 nt)	rarD	chloramphenicol‑sensitive protein
	?	NC_002947	3893061 =	50 (1.050)					coding (425/888 nt)	rarD	chloramphenicol‑sensitive protein

TGTCACACCACAGGCCGCCCAGGTTGTCGGTGCGGCAGCGTCGGCGCAGCACGAAGTAGACCGGGTAGCCGATCGTTACCAGCAGGGTTTCCCAGGCAAAACTGCCATTTTGGTACAGCTCGTGGCCCACGCC‑CAGTGCGGCGCAGGCCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3893180‑3893029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccacgAGCTGTACCAAAATGGCAGTTTTGCCTGGGAAACCCTGCTGGTAACGATCGGCTACCCGGTCTACTTCGTGCTGCGCCGACGCTGCCGCACCGACAACCTGGGCGGCCTGTGGTGTGACATGTGCCTGCTGCTGCCGTGGGCGCTGTA  >  NC_002947/3893061‑3893208                                                                                                                                                                                                                                                                                                               TGTCACACCACAGGCCGCCCAGGTTGTCGGTGCGGCAGCGTCGGCGCAGCACGAAGTAGACCGGGTAGCCGATCGTTACCAGCAGGGTTTCCCAGGCAAAACTGCCATTTTGGTACAGCTCGTGGCCCACGCC‑CAGTGCGGCGCAGGCC                                                                                                                                                         <  3:46399/149‑1   TCACACCACAGGCCGCCCAGGTTGTCGGTGCGGCAGCGTCGGCGCAGCACGAACTAGACCGGGTAGCCGATCGTTACCAGCAGGGTTTCCCAGGCAAAACTGCCATTTTGGTACAGCTCGTGGCCCACGCC‑CACTGCGGCGCAGGCCAC                                                                                                                                                       >  6:275209/1‑149                              GTGCGGCAGCGTCGGCGCAGCACGAAGTAGACCGGGTAGCCGATCGTTACCAGCAGGGTTTCCCAGGCAAAACTGCCATTTTGGTACAGCTCGTGGCCTGCGCCGCACTG‑GGCGTGGGCCACGAGCTGTACCAAAATGGCA                                                                                                                                    <  1:291084/141‑1                              GTGCGGCAGCGTCGGCGCAGCACGAAGTAGACCGGGTAGCCGATCGTTACCAGCAGGGTTTCCCAGGCAAAACTGCCATTTTGGTACAGCTCGTGGCCTGCGCCGCACTG‑GGCGTGGGCCACGAGCTGTACCAAAATGGCA                                                                                                                                    >  2:291084/1‑141                                                                                                                    CAGCTCGTGGCCCACGCC‑CAGTGCGGCGCAGGCCACGAGCTGTACCAAAATGGCAGTTTTGCCTGGGAAACCCTGCTGGTAACGATCGGCTACCCGGTCTACTTCGTGCTGCGCCGACGCTGCCGCACCGACAACCTGGGCGGCCTGTG                                      >  5:228757/1‑149                                                                                                                                                     CCACGAGCTGTACCAAAATGGCAGTTTTGCCTGGGAAACCCTGCTGGTAACGATCGGCTACCCGGTCTACTTCGTGCTGCGCCGACGCTGCCGCACCGACAACCTGGGCGGCCTGTGGTGTGACATGTGCCTGCTGCTGCCGTGGGCGC      >  8:95565/1‑149                                                                                                                                                       ACGAGCTGTACCAAAATGGCAGTTTTGCCTGGGAAACCCTGCTGGTAACGATCGGCTACCCGGTCTACTTCGTGCTGCGCCGACGCTGCCGCACCGACAACCTGGGCGGCCTGTGGTGTGACATGTGCCTGCTGCTGCCGTGGGCGCTG    <  7:95565/149‑1                                                                                                                                                       ACGAGCTGTACCAAAATGGCAGTTTTGCCTGGGAAACCCTGCTGGTAACGATCGGCTACCCGGTCTACTTCGTGCTGCGCCGACGCTGCCGCACCGACAACCTGGGCGGCCTGTGGTGTGACATGTGCCTGCTGCTGCCGTGGGCGCTG    <  8:118262/149‑1                                                                                                                                                         GAGCTGTACCAACCTGGCAGTTTTGCCTGGGAACCCCGGCTGGTAACGATCGGCTACCCGGTCTACTTCGTGCTGCGCCGACGCTGCCGCACCGACAACCTGGGCGGCCTGTGGTGTGACATGTGCCTGCTGCTGCCGTGGGCGCTGTA  <  4:46399/149‑1                                                                                                                                                                                                                                                                                                               TGTCACACCACAGGCCGCCCAGGTTGTCGGTGCGGCAGCGTCGGCGCAGCACGAAGTAGACCGGGTAGCCGATCGTTACCAGCAGGGTTTCCCAGGCAAAACTGCCATTTTGGTACAGCTCGTGGCCCACGCC‑CAGTGCGGCGCAGGCCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3893180‑3893029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccacgAGCTGTACCAAAATGGCAGTTTTGCCTGGGAAACCCTGCTGGTAACGATCGGCTACCCGGTCTACTTCGTGCTGCGCCGACGCTGCCGCACCGACAACCTGGGCGGCCTGTGGTGTGACATGTGCCTGCTGCTGCCGTGGGCGCTGTA  >  NC_002947/3893061‑3893208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.