New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3913538	44 (0.870)	5 (0.110)	5/242	NT	10.7%	coding (541/1302 nt)	PP_3453	sensor protein RstB
	?	NC_002947	= 3913558	42 (0.890)					coding (521/1302 nt)	PP_3453	sensor protein RstB

GTCCAGCCGGGTCAGTGGCGTGCGTAACTCGTGCGATACCGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTACGCTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3913383‑3913538 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctcggcGCCTGGGCCAGGGGCAGATGGCCGAGCG‑TACGCACATTTCGCCTCACTCCAACATTGGTGAACTGGCCGGGGTATTCGACACCATGGCCAGTGACCTGGAACGCCATGTCAACCAGCAGCGTGAACTGCTCAATGCGGTATCGCACGA  <  NC_002947/3913558‑3913411                                                                                                                                                                                                                                                                                                                   GTCCAGCCGGGTCAGTGGCGTGCGTAACTCGTGCGATACCGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTAC                                                                                                                                                              >  5:197534/1‑149                                   GATACCGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTACGCTCGGCGCCTGGGCCAGGGGCAGATGGCCGAGC                                                                                                                            <  1:142940/149‑1                                       CCGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTACGCTCGGCGCCTGGGCCAGGGGCAGATGGCCGAGCG‑TAC                                                                                                                       <  2:271437/149‑1                                           ATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTACGCTCGGCGCCTGGGCCAGGGGCAGATGGCCGAGCG‑TACGCAC                                                                                                                   <  5:305354/149‑1                                               AGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTACGCTCGGCGCCTGGGCCAGGGGCAGATGGCCGAGCG‑TACGCA                                                                                                                    >  3:152844/1‑144                                               AGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTACGCTCGGCGCCTGGGCCAGGGGCAGATGGCCGAGCG‑TACGCA                                                                                                                    <  4:152844/144‑1                                                   GTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTACGCTCGG                                                                                                                                                        <  1:15792/105‑1                                                   GTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTACGCTCGG                                                                                                                                                        >  2:15792/1‑105                                                                                                                                                     CGCTCGGCGCCTGGGCCAGGGGCAGATGGCCGAGCGTTACGCACATTTCGCCTCACTCCAACATTGGTGAACTGGCCGGGGTATTC                                                                         >  1:57038/1‑86                                                                                                                                                     CGCTCGGCGCCTGGGCCAGGGGCAGATGGCCGAGCG‑TACGCACATTTCGCCTCACTCCAACATTGGTGAACTGGCCGGGGTATTC                                                                         <  2:57038/85‑1                                                                                                                                                      GCTCGGCGCCTGGGCCAGGGGCAGATGGCCGAGCG‑TACGCACATTTCGCCTCACTCCAACATTGGTGAACTGGCCGGGGTATTCGACACCATGGCCAGTGACCTGGAACGCCATGTCAACCAGCAGCGTGAACTGCTCAATGCGGTATC        >  1:294590/1‑149                                                                                                                                                         CGGCGCCTGGGCCAGGGGCAGATGGCCGAGCG‑TACGCACATTTCGCCTCACTCCAACATTGGTGAACTGGCCGGGGTATTCGACACCATGGCCAGTGACCTGGAACGCCATGTCAACCAGCAGCGTGAACTGCTCAATGCGGTATCGCA     >  6:149499/1‑149                                                                                                                                                         CGGCGCCTGGGCCAGGGGCAGATGGCCGAGCG‑TACGCACATTTCGCCTCACTCCAACATTGGTGAACTGGCCGGGGTATTCGACACCATGGCCAGTGACCTGGAACGCCATGTCAACCAGCAGCGTGAACTGCTCAATGCGGTATCGCA     <  7:267701/149‑1                                                                                                                                                          GGCGCCTGGGCCAGGGGCAGATGGCCGAGCG‑TACGCACATTTCGCCTCACTCCAACATTGGTGAACTGGCCGGGGTATTCGACACCATGGCCAGTGACCTGGAACGCCATGTCAACCAGCAGCGTGAACTGCTCAATGCGGTATCGCAC    <  5:223462/149‑1                                                                                                                                                          GGCGCCTGGGCCAGGGGCAGATGGCCGAGCG‑TACGCACATTTCGCCTCACTCCAACATAGGTGAACTGGCCGGGGTATTCGACACCATGGCCAGTGACCTTGAACGCCATGTCAACCAGCAGCGTGAACTGCTCAATGCGGTATCGCAC    <  8:149144/149‑1                                                                                                                                                            CGCCTGGGCCAGGGGCAGATGGCCGAGCG‑TACGCACATTTCGCCTCACTCCAACATTGGTGAACTGGCCGGGGTATTCGACACCATGGCCAGTGACCTGGAACGCCATGTCAACCAGCAGCGTGAACTGCTCAATGCGGTATCGCACGA  <  1:184800/149‑1                                                                                                                                                                                                                                                                                                                   GTCCAGCCGGGTCAGTGGCGTGCGTAACTCGTGCGATACCGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTACGCTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3913383‑3913538 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctcggcGCCTGGGCCAGGGGCAGATGGCCGAGCG‑TACGCACATTTCGCCTCACTCCAACATTGGTGAACTGGCCGGGGTATTCGACACCATGGCCAGTGACCTGGAACGCCATGTCAACCAGCAGCGTGAACTGCTCAATGCGGTATCGCACGA  <  NC_002947/3913558‑3913411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.