New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3913538 | 44 (0.870) | 5 (0.110) | 5/242 | NT | 10.7% | coding (541/1302 nt) | PP_3453 | sensor protein RstB |
? | NC_002947 | = 3913558 | 42 (0.890) | coding (521/1302 nt) | PP_3453 | sensor protein RstB |
TCGTGCGATACCGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGCCCCACGACAGCACGTTGATGTCCAGCGGGTCTGGCGGGGAATGCAGGC > NC_002947/3913411‑3913705 | tCGTGCGATACCGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCg < 1:184800‑M2/149‑2 (MQ=255) gTGCGATACCGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCgcc < 5:223462‑M2/149‑4 (MQ=255) gTGCGATACCGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCAAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCTATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCgcc < 8:149144‑M2/149‑4 (MQ=255) tGCGATACCGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCgccg < 7:267701‑M2/149‑5 (MQ=255) tGCGATACCGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCgccg > 6:149499‑M2/1‑145 (MQ=255) gATACCGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCgccgagc > 1:294590‑M2/1‑142 (MQ=255) ccGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGt < 8:248693/148‑1 (MQ=255) ccGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGt < 5:294667/148‑1 (MQ=255) ccGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGt < 6:102106/148‑1 (MQ=255) cGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGtct > 2:40363/1‑149 (MQ=255) ttCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCt > 8:38677/1‑149 (MQ=255) tCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTc > 1:77490/1‑149 (MQ=255) ctgctgGTTGTCATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACGAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTCAGGCGCTCCAGAt < 1:40363/149‑1 (MQ=255) ctgGTTGACATGGCGTTCCAGGTCACTGGACATGGTGTCGAATACCCCGGCCATTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATc < 6:223462/147‑1 (MQ=255) tGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAg > 2:263582/1‑149 (MQ=255) tGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCgg < 7:158486/149‑1 (MQ=255) gCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGcc < 2:184800/149‑1 (MQ=255) gTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCa > 5:317063/1‑148 (MQ=255) ttCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCaaa < 1:263582/149‑1 (MQ=255) gTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCca > 3:142682/1‑147 (MQ=255) gCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCAcagcagcag < 6:317063/149‑1 (MQ=255) gCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCAcagcagca < 2:227945/148‑1 (MQ=255) gCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCAcagcagca < 7:38677/148‑1 (MQ=255) tGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCaa > 1:298310/1‑149 (MQ=255) tCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAg < 2:77490/149‑1 (MQ=255) gAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTAACGCTCGGCCATCTGCCCCTGGCCCAGGCgccgagcg > 1:57038‑M2/1‑78 (MQ=255) gAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCgccgagcg < 2:57038‑M2/85‑9 (MQ=255) cccGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTg > 1:116710/1‑149 (MQ=255) cccGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTg > 3:101875/1‑149 (MQ=255) cgcccAGTTAACCAATGTTGCAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGCCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCATCAGGCAACCCAGCATGGCTGCa > 8:87090/4‑149 (MQ=255) cGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCaa < 4:136650/134‑1 (MQ=255) cGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCa < 6:197534/149‑1 (MQ=255) aGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAAt < 8:174180/149‑1 (MQ=255) cAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACg > 5:229552/1‑149 (MQ=255) aaTGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGACCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACgg > 1:44612/1‑149 (MQ=255) gAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGcc > 6:120258/1‑149 (MQ=255) gAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGc < 8:267701/148‑1 (MQ=255) aGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGCCCCACg > 3:251557/1‑149 (MQ=255) gCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCAc < 6:240383/123‑1 (MQ=255) gCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCAc > 5:240383/1‑123 (MQ=255) gtgCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCgccgagcgtacgcacatttcgcctcactccaacattggtgaactggccggggtattcgacaccatggccagtgacctggaacgccatgtcaaccagcagcgtgaactgctcaat < 5:305354‑M2/149‑115 (MQ=255) tgCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCgccgagcgtacgcacatttcgcctcactccaacattggtgaactggccggggtattcgacaccatggccagtgacctggaacgccatgtcaaccagcagcgtgaactgct > 3:152844‑M2/1‑34 (MQ=255) tgCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCgccgagcgtacgcacatttcgcctcactccaacattggtgaactggccggggtattcgacaccatggccagtgacctggaacgccatgtcaaccagcagcgtgaactgct < 4:152844‑M2/144‑111 (MQ=255) tgCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGCCCCACGACAGCACGtt < 6:229552/149‑1 (MQ=255) cGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGCCCCACGACAGCACGTTg < 2:44612/148‑1 (MQ=255) cGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGCCCCACGACAGCACGTTg < 2:298310/148‑1 (MQ=255) gTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCgccgagcgtacgcacatttcgcctcactccaacattggtgaactggccggggtattcgacaccatggccagtgacctggaacgccatgtcaaccagcagcgtgaactgctcaatgcgg < 2:271437‑M2/149‑119 (MQ=255) tA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGCCCCACGACAGCACGTTGAt > 6:123448/1‑148 (MQ=255) tA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGCCCCACGACAGCACGTTGAt < 5:123448/148‑1 (MQ=255) gCTCGGCCATCTGCCCCTGGCCCAGGCgccgagcgtacgcacatttcgcctcactccaacattggtgaactggccggggtattcgacaccatggccagtgacctggaacgccatgtcaaccagcagcgtgaactgctcaatgcggtatc < 1:142940‑M2/149‑123 (MQ=255) tCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGCCCCACGACAGCACGTTGATGTCCAg > 6:222555/1‑149 (MQ=255) ggCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGCCCCACGACAGCACGTTGATGTCCAg < 4:16008/147‑1 (MQ=255) ccATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGCCCCACGACAGCACGTTGATGTCCAGCggg > 2:67611/1‑149 (MQ=255) ccccTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACCGCAGCAGGCACCCCAGCCTGGCTGCCCCAATCACCCCGGTCCCGCCCCACGACAGCACGTTGAGGTCCAGCGGGTCTGGCg > 1:254619/1‑149 (MQ=255) cccTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCCGCAGGCAACCCCGCCTGGCTGCACCAATCAACACGGTCACGCCCCACGACAGCACGTTGATGTCCAGCGGGTCTGGCgg < 5:187363/149‑1 (MQ=255) ccTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGCCCCACGACAGCACGTTGATGTCCAGCGGGTCTGGCggg > 4:284129/1‑149 (MQ=255) gCCCAGGAGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGCCCCACGACAGCACGTTGATGTCCAGCGGGTCTGGCGGGGaa < 7:87090/148‑1 (MQ=255) ccAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACGCGGTCACGCCCCACGACAGCACGTTGATGTCCAGCGGGTCTGGCGGGGAATg > 1:264142/1‑148 (MQ=255) ccAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGCCCCACGACAGCACGTTGATGTCCAGCGGGTCTGGCGGGGAATg > 3:277362/1‑148 (MQ=255) gcgcCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGCCCCACGACATCACGTTGATGTCCAGCGGGTCTGGCGGGGAATGCAGGc < 5:120258/149‑1 (MQ=255) | TCGTGCGATACCGCATTGAGCAGTTCACGCTGCTGGTTGACATGGCGTTCCAGGTCACTGGCCATGGTGTCGAATACCCCGGCCAGTTCACCAATGTTGGAGTGAGGCGAAATGTGCGTA‑CGCTCGGCCATCTGCCCCTGGCCCAGGCGCCGAGCGGTCTCCTTGAGGCGCTCCAGATCACGCCAGTGCGGCCAAACCCACAGCAGCAGGCAACCCAGCATGGCTGCACCAATCAACACGGTCACGCCCCACGACAGCACGTTGATGTCCAGCGGGTCTGGCGGGGAATGCAGGC > NC_002947/3913411‑3913705 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |