New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3955280	54 (1.070)	4 (0.080)	4/248	NT	7.5%	coding (5105/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
	?	NC_002947	= 3955300	47 (0.970)					coding (5085/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase

GTGCGCGCTGCCACACCGTGACGAAGTCGCGGTAGTCCGGCTGGCCGCTGACCTTCACCGTGGCCTGGGTACGGGTAGCAGTATCCTCGGTCCA‑GGTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3955179‑3955280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcCATGAGCATCCTGCCGCAAAGCGCCACC  <  NC_002947/3955300‑3955273                                                                                                                                     gttCGCGCTGCCACACCGTGACGAAGTCGCGGTAGTCCGGCTGGCCGCTGACCTTCACCGTGGCCTGGGTACGGGTAGCAGTATCCTCGGTCCACGGTGGCGCCATGAGCATCCTGCCGCAAAGCGCCAC   <  1:48600/127‑1 GTGCGCGCTGCCACACCGTGACGAAGTCGCGGTAGTCCGGCTGGCCGCTGACCTTCACCGTGGCCTGGGTACGGGTAGCAGTATCCTCGGTCCA‑GGTGGCGCCATGAGCATCCTGCCGCAAAGCGCCAC   >  2:48600/1‑129             ACACCGTGACGAAGTCGCGGTAGTCCGGCTGGCCGCTGACCTTCACCGTGGCCTGGGTACGGGTAGCAGTATCCTCGGTCCA‑GGTGGCGCCATGAGCATCCTGCCGCAAAGCGCCACC  <  7:83516/118‑1             ACACCGTGACGAAGTCGCGGTAGTCCGGCTGGCCGCTGACCTTCACCGTGGCCTGGGTACGGGTAGCAGTATCCTCGGTCCA‑GGTGGCGCCATGAGCATCCTGCCGCAAAGCGCCACC  >  8:83516/1‑118                                                                                                                                     GTGCGCGCTGCCACACCGTGACGAAGTCGCGGTAGTCCGGCTGGCCGCTGACCTTCACCGTGGCCTGGGTACGGGTAGCAGTATCCTCGGTCCA‑GGTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3955179‑3955280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcCATGAGCATCCTGCCGCAAAGCGCCACC  <  NC_002947/3955300‑3955273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.