New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4024969 =	64 (1.270)	4 (0.080)	4/242	NT	7.1%	coding (730/1194 nt)	emrA	multidrug transporter membrane fusion protein
	?	NC_002947	4025047 =	45 (0.950)					coding (652/1194 nt)	emrA	multidrug transporter membrane fusion protein

TGGTGTCCTCGCACCCCGATGTCATGGCTGCAGCTGCCGACCTGCGCCAGGCCTACCTCGACCACGCCCGCACCACGTTGGTCGCGCCGGTCACCGGCTACGTCGCCAAGCGTACCGTCCAGTTGGGCCAGCGCCTGCAGCCGGGCACCGCGACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4025124‑4024969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgaccaACGTGGTGCGGGCGTGGTCGAGGTAGGCCTGGCGCAGGTCGGCAGCTGCAGCCATGACATCGGGGTGCGAGGACACCACGGTGTCGTCGACCAGCGCGCTGCTGGTGCTGAGCTGTTGCCGCGCGCTGTTGACGGCAGCCTG  >  NC_002947/4025047‑4025188                                                                                                                                                                                                                                                                                                            TGGTGTCCTCGCACCCCGATGTCATGGCTGCAGCTGCCGACCTGCGCCAGGCCTACCTCGACCACGCCCGCACCACGTTGGTCGCGCCGGTCACCGGCTACGTCGCCAAGCGTACCGTCCAGTTGGGCCAGCGCCTGCAGCCGGGCACC                                                                                                                                                       <  7:59942/149‑1  GGTGTCCTCGCACCCCGATGTCATGGCTGCAGCTGCCGACCTGCGCCAGGCCTACCTCGACCACGCCCGCACCACGTTGGTCGCGCCGGTCACCGGCTACGTCGCCAAGCGTACCGTCCAGTTGGGCCAGCGCCTGCAGCCGGGCACCG                                                                                                                                                      >  8:122491/1‑149   GTGTCCTCGCACCCCGATGTCATGGCTGCAGCTGCCGACCTGCGCCAGGCCTACCTCGACCACGCCCGCACCACGTTGGTCGCGCCGGTCACCGGCTACGTCGCCAAGCGTACCGTCCAGTTGGGCCAGCGCCTGCAGCCGGGCACCGC                                                                                                                                                     >  5:197817/1‑149   GTGTCCTCGCACCCCGATGTCATGGCTGCAGCTGCCGACCTGCGCCAGGCCTACCTCGACCACGCCCGCACCACGTTGGTCGCGCCGGTCACCGGCTACGTCGCCAAGCGTACCGTCCAGTTGGGCCAGCGCCTGCAGCCGGGCACCGC                                                                                                                                                     >  6:113557/1‑149       CCTCGCACCCCGATGTCATGGCTGCAGCTGCCGACCTGCGCCAGGCCTACCTCGACCACGCCCGCACCACGTTGGCCGCGCCGGTCACCGGCTACGTCGCCAAGCGTACCGTCCAGTTGGGCCAGCGCCTGCAGCCGGGCACCGCGAC                                                                                                                                                  >  3:53934/1‑148                                                                            CGTTGGTCGCGCCGGTCACCGGCTACGTCGCCAAGCGTACCGTCCAGTTGGGCCAGCGCCTGCAGCCGGGCACCGCGACCAACGTGGTGCGGGCGTGGTCGAGGTAGGCCTGGCGCAGGTCGGCAGCTGCAGCCATGACATCGGGGTGC                                                                            >  1:157220/1‑149                                                                              TTGGTCGCGCCGGTCACCGGCTACGTCGCCAAGCGTACCGTCCAGTTGGGCCAGCGCCTGCAGCCGGGCACCGCGACCAACGTGGTGCGGGCGTGGTCGAGGTAGGCCTGGCGCAGGTCGGCAGCTGCAGCCATGACATCGGGGTGC                                                                            >  1:137762/1‑147                                                                                                 GCTACGTCGCCAAGCGTACCGTCCAGTTGGGCCAGCGCCTGCAGCCGGGCACCGCGACCAACGTGGTGCGGGCGTGGTCGAGGTAGGCCTGGCGCAGGTCGGCAGCTGCAGCCATGACATCGGGGTGCGAGGACACCACGGTGTCGTCG                                                       <  2:137762/149‑1                                                                                                                                CCAGCGCCTGCAGCCGGGCACCGCGACCAACGTGGTGCGGGCGTGGTCGAGGTAGGCCTGGCGCAGGTCGGCAGCTGCAGCCATGACATCGGGGTGCGAGGACACCACGGTGTCGTCGACCAGCGCGCTGCTGGTGCTGAGCTGTTGCC                        <  2:157220/149‑1                                                                                                                                                      GCGACCAACGTGGTGCGGGCGTGGTCGAGGTAGGCCTGGCGCAGGTCGGCAGCTGCAGCCATGACATCGGGGTGCGAGGACACCACGGTGTCGTCGACCAGCGCGCTGCTGGTGCTGAGCTGTTGCCGCGCGCTGTTGACGGCAGCCTG  >  6:313086/1‑149                                                                                                                                                                                                                                                                                                            TGGTGTCCTCGCACCCCGATGTCATGGCTGCAGCTGCCGACCTGCGCCAGGCCTACCTCGACCACGCCCGCACCACGTTGGTCGCGCCGGTCACCGGCTACGTCGCCAAGCGTACCGTCCAGTTGGGCCAGCGCCTGCAGCCGGGCACCGCGACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4025124‑4024969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgaccaACGTGGTGCGGGCGTGGTCGAGGTAGGCCTGGCGCAGGTCGGCAGCTGCAGCCATGACATCGGGGTGCGAGGACACCACGGTGTCGTCGACCAGCGCGCTGCTGGTGCTGAGCTGTTGCCGCGCGCTGTTGACGGCAGCCTG  >  NC_002947/4025047‑4025188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.