New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4057672 =	56 (1.110)	3 (0.060)	3/240	NT	5.8%	intergenic (‑11/+57)	PP_3575/PP_3576	ferric siderophore receptor/transmembrane sensor
	?	NC_002947	4057724 =	46 (0.980)					intergenic (‑63/+5)	PP_3575/PP_3576	ferric siderophore receptor/transmembrane sensor

GACCGGGTGTTGGCCCTGCTCGCCGCCAGCCTGCCGTTGCAGGTGCAGACCCGCACGCGTTATTGGGTGAGCCTGACCGCACGAGAAAATCGATCATGAGACTGTCCCCTTTTTTTCACTCGCCGGTCATTACCGGTAGGAGAAAATAAAAGGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4057827‑4057672 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggggaCAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCGGTCGGTGTCGTCAAGGCGGAACGTGCCGGTAACAC  >  NC_002947/4057724‑4057859                                                                                                                                                                                                                                                                                                      GACCGGGTGTTGGCCCTGCTCGCCGCCAGCCTGCCGTTGCAGGTGCAGACCCGCACGCGTTATTGGGTGAGCCTGACCGCACGAGAAAATCGATCATGAGACTGTCCCCTTTTTTTCACTCGCCGGTCATTACCGGTAGGAGAAAATA                                                                                                                                                  >  3:68588/1‑148    CGGGTGTTGGCCCTGCTCGCCGCCAGCCTGCCGTTGCAGGTGCAGACCCGCACGCGTTATTGGGTGAGCCTGACCGCACGAGAAAATCGATCATGAGACTGTCCCCTTTTTTTCACTCGCCGGTCATTACCGGTAGGAGAAAATAAAAG                                                                                                                                              <  6:257536/149‑1        TGTTGGCCCTGCTCGCCGCCAGCCTGCCGTTGCAGGTGCAGACCCGCACGCGTTATTGGGTGAGCCTGACCGCACGAGAAAATCGATCATGAGACTGTCCCCTTTTTTTCACTCGCCGGTCATTACCGGTAGGAGAAAATAAAAGGG                                                                                                                                            >  4:70941/1‑147               CCTGCTCGCCGCCAGCCTGCCGTTGCAGGTGCAGACCCGCACGCGTTATTGGGTGAGCCTGACCGCACGAGAAAATCGATCATGAGACTGTCCCCTTTTTTTCACTCGCCGGTCATTACCGGTAGGAGAAAATAAAAG                                                                                                                                              >  5:326170/1‑138               CCTGCTCGCCGCCAGCCTGCCGTTGCAGGTGCAGACCCGCACGCGTTATTGGGTGAGCCTGACCGCACGAGAAAATCGATCATGAGACTGTCCCCTTTTTTTCACTCGCCGGTCATTACCGGTAGGAGAAAATAAAAG                                                                                                                                              <  6:326170/138‑1                                                                                                        GTCCCCTTTTTTTCACTCGCCGGTCATTACCGGTAGGAGAAAATAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCGATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCCGGCGGCGAGCAGGGCCAA                                           >  2:82353/1‑148                                                                                                         TCCCCTTTTTTTCACTCGCCGGTCATTACCGGTAGGAGAAAATAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACA                                         >  1:23618/1‑149                                                                                                                   TTCACTCGCCGGTCATTACCGGTAGGAGAAAATAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCGATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCCGGCGGCGAGCAGGGCCAACACCCGGTCGG                                <  1:82353/148‑1                                                                                                                                                AAATAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCGGTCGGTGTCGTCAAGGCGGAACGTGCCGGTAACAC  <  2:23618/149‑1                                                                                                                                                                                                                                                                                                      GACCGGGTGTTGGCCCTGCTCGCCGCCAGCCTGCCGTTGCAGGTGCAGACCCGCACGCGTTATTGGGTGAGCCTGACCGCACGAGAAAATCGATCATGAGACTGTCCCCTTTTTTTCACTCGCCGGTCATTACCGGTAGGAGAAAATAAAAGGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4057827‑4057672 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggggaCAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCGGTCGGTGTCGTCAAGGCGGAACGTGCCGGTAACAC  >  NC_002947/4057724‑4057859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.