New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4057672 = | 56 (1.110) | 3 (0.060) | 3/240 | NT | 5.8% | intergenic (‑11/+57) | PP_3575/PP_3576 | ferric siderophore receptor/transmembrane sensor |
? | NC_002947 | 4057724 = | 46 (0.980) | intergenic (‑63/+5) | PP_3575/PP_3576 | ferric siderophore receptor/transmembrane sensor |
GTGCACACAACAGCAGGCTCATCGCGAACAATGGATGTGCTGCGCGCGCCAGTGGGCGCAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCGGTCGGTGTCGTCAAGGCGGAACGTGCCGGTAACACGC > NC_002947/4057577‑4057861 | ttggccctgctcgccgccggcctgccgttgcaggtgcagacccgcacgcgttatcgggtgagcctgaccgcacgagaaaatcgatcatgagactgTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGAc > 2:82353‑M1/96‑148 (MQ=255) acacaACAGCAGGCTCATCGCGAACAATGGATGTGCTGCGCGCGCCAGTGGGCGCAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGtct > 8:224431/1‑149 (MQ=255) acaacaGCAGGCTCATCGCGAACAATGGATGTGCTGCGCGCGCCAGTGGGCGCAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGt > 5:309745/1‑145 (MQ=255) acaacaGCAGGCTCATCGCGAACAATGGATGTGCTGCGCGCGCCAGTGGGCGCAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGt < 6:309745/145‑1 (MQ=255) cagcagGCTCATCGCGAACAATGGATGTGCTGCGCGCGCCAGTGGGCGCAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGAt < 4:37689/149‑1 (MQ=255) cagcagGCTCATCGCGAACAATGGATGTGCTGCGCGCGCCAGTGGGCGCAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGAt < 3:61728/149‑1 (MQ=255) tCATCGCGAACAATGGATGTGCTGCGCGCGCCAGTGGGCGCAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTtc > 3:194868/1‑149 (MQ=255) ttCGCGAACAATGGCTGTTCTGCGCGCGCCAGTGGGCGGAGGCGGCAATATTTTACTGCAGGCATTGAACACTGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTtc < 5:76768/146‑1 (MQ=255) tCGCGAACAATGGATGTGCTGCGCGCGCCAGTGGGCGCAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCg > 5:96708/1‑149 (MQ=255) cgcgAACAATGGATGTGCTGCGCGCGCCAGTGGGCGCAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGt > 3:70941/1‑149 (MQ=255) gcgAACAATGGATGTGCTGCGCGCGCCAGTGGGCGCAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCg < 8:156923/147‑1 (MQ=255) gcgAACAATGGATGTGCTGCGCGCGCCAGTGGGCGCAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCg > 7:156923/1‑147 (MQ=255) gcgAACAATGGATGTGCTGCGCGCGCCAGTGGGCGCAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGt < 5:149520/148‑1 (MQ=255) aaTGGATGTGCTCCGAGCGCAAGTGGGCGCAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGCTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATCATCGATTTACTAGTGCGGta > 4:68588/1‑147 (MQ=255) tGGAGGCGCTGCCCGCGCCAGTGGGCGCAGGCGGCAAGAATTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGAAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAgg < 6:165455/149‑1 (MQ=255) gTGGGCGCAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCg > 3:255149/1‑149 (MQ=255) cgcAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCt < 4:194868/149‑1 (MQ=255) cgcAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGAGGTCATGCTCACCCAATAACGCGTGCGGGTCt > 4:55468/1‑149 (MQ=255) gcAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTg > 2:37564/1‑149 (MQ=255) ggcggcAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCAc < 5:282241/149‑1 (MQ=255) cAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGt > 7:97089/1‑138 (MQ=255) cAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGt < 8:97089/138‑1 (MQ=255) aaGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCTGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCgg > 3:241993/1‑135 (MQ=255) aaGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCTGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCgg < 4:241993/135‑1 (MQ=255) aaGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACGCAATAACGCGTGCGGGTCTGCACCTGCaa > 5:289176/1‑149 (MQ=255) aaGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCaa < 1:238238/149‑1 (MQ=255) gATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACg > 8:3669/1‑149 (MQ=255) tACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGAGCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCATGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAg < 2:219245/148‑1 (MQ=255) cAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTggc > 5:99793/1‑149 (MQ=255) gCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCt < 8:201119/130‑1 (MQ=255) gCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCt > 7:201119/1‑130 (MQ=255) aTTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTggcggc > 1:136875/1‑147 (MQ=255) aTTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTggcggc < 2:136875/147‑1 (MQ=255) ttGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAg > 5:146375/1‑149 (MQ=255) aCAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAgg < 3:228795/149‑1 (MQ=255) cAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAggg < 6:99793/149‑1 (MQ=255) aaGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGc < 4:255149/149‑1 (MQ=255) gCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCaa < 6:96708/149‑1 (MQ=255) gtcccctttttttcactcgccggtcattaccggtaggagaaaataaaaggggaCAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCGATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCCGGCGGCGAGCAGGGCCaa > 2:82353‑M2/54‑148 (MQ=255) cTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAac < 1:37564/149‑1 (MQ=255) tcccctttttttcactcgccggtcattaccggtaggagaaaataaaaggggaCAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAaca > 1:23618‑M2/53‑149 (MQ=255) CCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAaca > 4:70941‑M1/1‑147 (MQ=255) CTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAgg > 5:326170‑M1/1‑138 (MQ=255) CTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAgg < 6:326170‑M1/138‑1 (MQ=255) CTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCg < 6:257536‑M1/149‑1 (MQ=255) TATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCGGTc > 3:68588‑M1/1‑148 (MQ=255) ttttCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCcggtcggt < 7:283702/149‑1 (MQ=255) ttcactcgccggtcattaccggtaggagaaaataaaaggggaCAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCGATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCCGGCGGCGAGCAGGGCCAACACCcggtcgg < 1:82353‑M2/106‑1 (MQ=255) tttCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGTGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCGGTCGgtg > 5:6714/1‑149 (MQ=255) cTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCGGTCGGTgtcgt < 7:3669/147‑1 (MQ=255) ccGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCGGTCGGTGTCGTCAAgg < 6:146375/149‑1 (MQ=255) cGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGc > 3:53220/1‑103 (MQ=255) cGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGc < 4:53220/103‑1 (MQ=255) aTGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTGTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTg > 5:131086/1‑85 (MQ=255) aTGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTg < 6:131086/85‑1 (MQ=255) aTGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCGGTCGGTGTCGTCAAGGCGGaa < 7:224431/148‑1 (MQ=255) ggCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCGGTCGGTGTCGTCAAGGCGGAACGTGCCg < 6:289176/149‑1 (MQ=255) gAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCGGTCGGTGTCGTCAAGGCGGAACGTGCCGGTAacac > 1:125343/1‑149 (MQ=255) aaataaaaggggaCAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCGGTCGGTGTCGTCAAGGCGGAACGTGCCGGTAacac < 2:23618‑M2/136‑1 (MQ=255) aaaaaaaGGGGACAGTCTCATGAACGATTTTCTAGTGCGGTCAGGCTCACCCAATAACGAGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCGGTCGGTGTCGTCAAGGCGGAACGTGCCGGTAACACg > 8:114387/1‑149 (MQ=255) aaaaaGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCGGTCGGTGTCGTCAAGGCGGAACGTGCCGGTAACACGc > 4:100863/1‑148 (MQ=255) | GTGCACACAACAGCAGGCTCATCGCGAACAATGGATGTGCTGCGCGCGCCAGTGGGCGCAGGCGGCAAGATTTTACTGCAGGCATTGAACAAGGCTCCCCTTTTATTTTCTCCTACCGGTAATGACCGGCGAGTGAAAAAAAGGGGACAGTCTCATGATCGATTTTCTCGTGCGGTCAGGCTCACCCAATAACGCGTGCGGGTCTGCACCTGCAACGGCAGGCTGGCGGCGAGCAGGGCCAACACCCGGTCGGTGTCGTCAAGGCGGAACGTGCCGGTAACACGC > NC_002947/4057577‑4057861 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |