| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4073100 = | 53 (1.050) | 4 (0.080) | 4/244 | NT | 7.1% | coding (363/1308 nt) | mdtA | multidrug transporter membrane fusion protein |
| ? | NC_002947 | 4073133 = | 55 (1.150) | coding (330/1308 nt) | mdtA | multidrug transporter membrane fusion protein | |||||
TGCCGGTGCGGATAGGCGACTTCCCCCTCTACTACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAGGCTGGCGACCTGCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4073254‑4073100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggccTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTATCCGCACCGGCACGACGCGTACGGGTACCGGGTCGCTG > NC_002947/4073133‑4073280 TGCCGGTGCGGATAGGCGACTTCCCCCTCTACTACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAGGCTGGCGACCTG < 2:160921/149‑1TGCCGGTGCGGATAGGCGACTTCCCCCTCTACTACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAGGCTGGCGACCTG < 7:57062/149‑1 GCCGGTGCGGATAGGCGACTTCCCCCTCTACTACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAGGCTGGCGACCTGC > 4:29228/1‑149 TTCCCCCTCTACTACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAGGCTGGCGACCTGC > 2:264692/1‑130 TACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAGGCTGGCGACCTG < 5:51919/117‑1 TACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAGGCTGGCGACCTG > 6:51919/1‑117 AGGAAGGCCAGCGCGTCAAGGCTGGCGACCTGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGG < 5:149494/106‑1 AGGAAGGCCAGCGCGTCAAGGCTGGCGACCTGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGG > 6:149494/1‑106 GGAAGGCCAGCGCGTCAAGGCTGGCGACCTGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGG > 1:277579/1‑136 GGAAGGCCAGCGCGTCAAGGCTGGCGACCTGCTGGCCTTCCTTGAAGGGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGG < 2:277579/136‑1 GCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTATCCGCACCGGCACGACGCGTACGGGTACCGGGTCGC < 5:258522/149‑1 CTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTATCCGCACCGGCACGACGCGTACGGGTACCGGGTCGCTG < 5:213707/149‑1 CTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTA > 5:191846/1‑111 CTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTA < 6:191846/111‑1 TGCCGGTGCGGATAGGCGACTTCCCCCTCTACTACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAGGCTGGCGACCTGCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4073254‑4073100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggccTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTATCCGCACCGGCACGACGCGTACGGGTACCGGGTCGCTG > NC_002947/4073133‑4073280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |