New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4086293 =	64 (1.270)	3 (0.060)	3/244	NT	5.3%	coding (992/1245 nt)	amaD	D‑lysine oxidase
	?	NC_002947	4086405 =	46 (0.970)					coding (1104/1245 nt)	amaD	D‑lysine oxidase

GCCGTGATGGGCATGGCCGAAGTTGAACCACAGCCCTGGGTGGCGCGGCGCCGGCCCGATCACCGGGCGCATGTCCGGCAGGCAGGGGCGGCGGCCCAGCCATGGCGTGTCGTCCAGACGATCGCCGAGGGCCGGGAACAGCTTGCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4086444‑4086293 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgccaCCCAGGGCTGTGGTTCAACTTCGGCCATGCCCATCACGGCCTCACGCTGGGCCCGGTCTGCGGCCGGCTGCTGGCCGAGCTGCTCACTGGCGAGCCCCCCTTCACCGACCCCGCGCCTTACAGCGCGACCCGTTTCGACTGAAC  >  NC_002947/4086405‑4086548                                                                                                                                                                                                                                                                                                          GCCGTGATGGGCATGGCCGAAGTTGAACCACAGCCCTGGGTGGCGCGGCGCCGGCCCGATCACCGGGCGCATGTCCGGCAGGCAGGGGCGGCGGCCCAGCCATGGCGTGTCGTCCAGACGATCGCCGAGGGCCGGGAACAGCTTGCGCG                                                                                                                                                     >  3:263533/1‑149                                    CTGGGTGGCGCGGCGCCGGCCCGATCACCGGGCGCATGTCCGGCAGGCAGGGGCGGCGGCCCAGCCATGGCGTGTCGTCCAGACGATCGCCGAGGGCCGGGAACAGCTTGCGCGCCACCCAGGGCAGTGGTTCAACTTCGGCCATGCC                                                                                                                   >  8:1938/1‑148                                        GTGGCGCGGCGCCGGCCCGATCACCGGGCGCATGTCCGGCAGGCAGGGGCGGCGGCCCAGCCATGGCGTGTCGTCCAGACGATCGCCGAGGGCCGGGAACAGCTTGCGCGCCACCCAGGGCTGTGGTTCAACTTCGGCCATGCCCATCA                                                                                                              >  8:135817/1‑149                                                      GCCCGATCACCGGGCGCATGTCCGGCAGGCAGGGGCGGCGGCCCAGCCATGGCGTGTCGTCCAGACGATCGCCGAGGGCCGGGAACAGCTTGCGCGCCACCCAGGGCTGTGGTTCAACTTCGGCCATGCCCATCACGGCCTCACGCTGG                                                                                                <  7:135817/149‑1                                                                                                                                                   GCGCCACCCAGGGCTGTGGTTCAACTTCGGCCATGCCCATCACGGCCTCACGCTGGGCCCGGTCTGCGGCCGGCTGCTGGCCGAGCTGCTCACTGGCGAGCCCCCCTTCACCGACCCCGCGCCTTACAGCGCGACCCGTTTCGACTGAA   <  3:280596/149‑1                                                                                                                                                   GCGCCACCCAGGGCTGTGGTTCAACTTCGGCCATGCCCATCACGGCCTCACGCTGGGCCCGGTCTGCGGCCGGCTGCTGGCCGAGCTGCTCACTGGCGAGCCCCCCTTCACCGACCCCGCGCCTTACAGCGCGACCCGTTTCGACTGAA   >  3:81926/1‑149                                                                                                                                                    CGCCACCCAGGGCTGTGGTTCAACTTCGGCCATGCCCATCACGGCCTCACGCTGGGCCCGGTCTGCGGCCGGCTGCTGGCCGAGCTGCTCACTGGCGAGCCCCCCTTCACCGACCCCGCGCCTTACAGCGCGACCCGTTTCGACTGAAC  >  1:99314/1‑149                                                                                                                                                                                                                                                                                                          GCCGTGATGGGCATGGCCGAAGTTGAACCACAGCCCTGGGTGGCGCGGCGCCGGCCCGATCACCGGGCGCATGTCCGGCAGGCAGGGGCGGCGGCCCAGCCATGGCGTGTCGTCCAGACGATCGCCGAGGGCCGGGAACAGCTTGCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4086444‑4086293 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgccaCCCAGGGCTGTGGTTCAACTTCGGCCATGCCCATCACGGCCTCACGCTGGGCCCGGTCTGCGGCCGGCTGCTGGCCGAGCTGCTCACTGGCGAGCCCCCCTTCACCGACCCCGCGCCTTACAGCGCGACCCGTTTCGACTGAAC  >  NC_002947/4086405‑4086548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.