| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4255645 = | 49 (0.970) | 4 (0.080) | 4/242 | NT | 7.9% | coding (483/2253 nt) | PP_3728 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 4255688 = | 47 (0.990) | coding (440/2253 nt) | PP_3728 | two‑component system sensor histidine kinase/response regulator | |||||
CCCCCTGGATTATCAGCCCCCCTCGGGCCCCGCCAGGCACCTGGGTGAGCTTGAAGTGAGTATCGACTTGGGTGCGGTGCACCATCGGTTGTATGCCACCGGCCTTGCCAGCCTGCTGTGGATGGGCGTGTTCCTGTGTGGGCTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4255792‑4255645‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggcaAGGCCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTGATAATCCAGGGGGAAGCGCTCGATGCGCAGCGGCCCCTTGGGTTCGGC > NC_002947/4255688‑4255827 CCCCCTGGATTATCAGCCCCCCTCGGGCCCCGCCAGGCACCTGGGTGAGCTTGAAGTGAGTATCGACTTGGGTGCGGTGCACCATCGGTTGTATGCCACCGGCCTTGCCAGCCTGCTGTGGATGGGCGTGTTCCTGTGTGGGCTGGC < 1:93558/147‑1 CTGGATTATCAGCCCCCCTCGGGCCCCGCCAGGCACCTGGGTGAGCTTGAAGTGAGTATCGACTTGGGTGCGGTGCACCATCGGTTGTATGCCACCGGCCTTGCCAGCCTGCTGTGGATGGGCGTGTTCCTGTGTGGG > 3:187462/1‑138 CTGGATTATCAGCCCCCCTCGGGCCCCGCCAGGCACCTGGGTGAGCTTGAAGTGAGTATCGACTTGGGTGCGGTGCACCATCGGTTGTATGCCACCGGCCTTGCCAGCCTGCTGTGGATGGGCGTGTTCCTGTGTGGG < 4:187462/138‑1 CCACCGGCCTTGCCAGCCTGCTGTGGATGGGCGTGTTCCTGTGTGGGCTGGCAAGGCCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTGATAA > 7:211600/1‑149 CCTTGCCAGCCTGCTGTGGATGGGCGTGTTCCTGTGTGGGCTGGCAAGGCCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTGATAATCCAGGG > 4:123690/1‑149 CTTGCCAGCCTGCTGTGGATGGGCGTGTTCCTGTGTGGGCTGGCAAGGCCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTGATAATCCAGGGG > 8:295083/1‑149 CTGTGTGGGCTGGCAAGGCCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTGATAATCCAGGGGGAAGCGCTCGATGCGCAGCGGCCCCTTGG < 8:211600/148‑1 GCTGGCAAGGCCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTGATAATCCAGGGGGAAGCGCTCGATGCGCAGCGGCCCCTTGGGTTCGGC < 1:76533/147‑1 GCTGGCAAGGCCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTGATAATCCAGGGGGAAGCGCTCGATGCGCAGCGGCCCCTTGGGTTCGGC > 2:76533/1‑147 CCCCCTGGATTATCAGCCCCCCTCGGGCCCCGCCAGGCACCTGGGTGAGCTTGAAGTGAGTATCGACTTGGGTGCGGTGCACCATCGGTTGTATGCCACCGGCCTTGCCAGCCTGCTGTGGATGGGCGTGTTCCTGTGTGGGCTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4255792‑4255645‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggcaAGGCCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTGATAATCCAGGGGGAAGCGCTCGATGCGCAGCGGCCCCTTGGGTTCGGC > NC_002947/4255688‑4255827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |