New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4255645 = | 49 (0.970) | 4 (0.080) | 4/242 | NT | 7.9% | coding (483/2253 nt) | PP_3728 | two‑component system sensor histidine kinase/response regulator |
? | NC_002947 | 4255688 = | 47 (0.990) | coding (440/2253 nt) | PP_3728 | two‑component system sensor histidine kinase/response regulator |
CCGTGTCGATTTCGTCGGGGCGCGATGATCGGCGGCGGCCAAGGCGCAACGGCTCCTGCCACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTGATAATCCAGGG > NC_002947/4255497‑4255790 | ccGTGTCGATTTCGTCGGGGCGCGATGATCGGCGGCGGCCAAGGCGCAACGGCTCCTGCCACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACt > 6:203035/1‑149 (MQ=255) gATTTCGTCGGGGCGCGATGATCGGCGGCGGCCAAGGCGCAACGGCTCCTGCCACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGcc > 7:193378/1‑149 (MQ=255) gATTTCGTCGGGGCGCGATGATCGGCGGCGGCCAAGGCGCAACGGCTCCTGCCACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGcc < 1:155096/149‑1 (MQ=255) gATTTCGTCGGGGCGCGATGATCGGCGGCGGCCAAGGCGCAACGGCTCCTGCCACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGc < 2:24282/148‑1 (MQ=255) gccgaacccaaggggccgctgcgcatcgagcgcttccccctggattatcagcccccctcgggccccgccaggcacctgggtgagcttgaagtgagtatcgacttgggtgcggtgcaccatcggttgtatgccaccggcctTGCCAGc < 1:76533‑M1/7‑1 (MQ=255) gccgaacccaaggggccgctgcgcatcgagcgcttccccctggattatcagcccccctcgggccccgccaggcacctgggtgagcttgaagtgagtatcgacttgggtgcggtgcaccatcggttgtatgccaccggcctTGCCAGc > 2:76533‑M1/141‑147 (MQ=255) aTTTCGTCGGGGCGCGATGATCGGCGGCGGCCAAGGCGCAACGGCTCCTGCCACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGccc > 7:233587/1‑149 (MQ=255) gtcgGGGCGCGATGATCGGCGGCGGCCAAGGCGCAACGGCTCCTGCCACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCcacac < 5:30434/148‑1 (MQ=255) gtcgGGGCGCGATGATCGGCGGCGGCCAAGGCGCAACGGCTCCTGCCACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCcaca > 8:195690/1‑147 (MQ=255) ccaaggggccgctgcgcatcgagcgcttccccctggattatcagcccccctcgggccccgccaggcacctgggtgagcttgaagtgagtatcgacttgggtgcggtgcaccatcggttgtatgccaccggcctTGCCAGCCCACACAg < 8:211600‑M1/15‑1 (MQ=255) atgatCGGCGGCGGCCAAGGCGCAACGGCTCCTGCCACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGccc < 8:233587/149‑1 (MQ=255) atgatCGGCGGAGGCCAAGGAGGAAGGGCTCCTGAAACTGGCCGGCGACAATGCGGCGGGCTAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCACCGACAGCGCAACTGCCAGCCCACACAGGAACACGccc < 8:146998/149‑1 (MQ=255) atCGGCGGCGGCCAAGGCGCAACGGCTCCTGCCACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATc < 5:203035/149‑1 (MQ=255) atCGGCGGCGGCCAAGGCGCAACGGCTCCTGCCACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATc < 8:193378/149‑1 (MQ=255) cgcAACGGCTCCTGCCACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAg < 4:146971/149‑1 (MQ=255) cccctggattatcagcccccctcgggccccgccaggcacctgggtgagcttgaagtgagtatcgacttgggtgcggtgcaccatcggttgtatgccaccggcctTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAg > 8:295083‑M1/105‑149 (MQ=255) ccctggattatcagcccccctcgggccccgccaggcacctgggtgagcttgaagtgagtatcgacttgggtgcggtgcaccatcggttgtatgccaccggcctTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAgg > 4:123690‑M1/104‑149 (MQ=255) ttatcagcccccctcgggccccgccaggcacctgggtgagcttgaagtgagtatcgacttgggtgcggtgcaccatcggttgtatgccaccggcctTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTgg > 7:211600‑M1/97‑149 (MQ=255) cTCCTGCCACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGcc > 8:3690/1‑104 (MQ=255) tCCTGCCCCTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTgg > 2:49795/1‑148 (MQ=255) ccACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCgg > 4:39739/1‑140 (MQ=255) ccACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCgg < 3:39739/140‑1 (MQ=255) ccTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAAc < 1:49795/148‑1 (MQ=255) cccGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGAt > 3:208094/2‑149 (MQ=255) gcgcCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTg < 1:248371/149‑1 (MQ=255) gcCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACCCAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACCACCGATGGTgca > 3:227369/1‑149 (MQ=255) gcCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTgca > 3:103112/1‑149 (MQ=255) gcAATGCGGCGGGCGAACTCGGCCATGACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCGACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCAt < 2:189701/132‑1 (MQ=255) ccAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCAt < 6:44393/133‑1 (MQ=255) ccAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCAt > 5:44393/1‑133 (MQ=255) ccAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACAAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCAt > 1:189701/1‑133 (MQ=255) aTGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTgcaccg > 6:197162/1‑148 (MQ=255) cgAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACt > 6:309376/1‑65 (MQ=255) cgAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACt < 5:309376/65‑1 (MQ=255) cgAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAg < 5:182234/146‑1 (MQ=255) cgAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAg > 6:182234/1‑146 (MQ=255) gAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGa < 4:103112/149‑1 (MQ=255) tCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGGCCCGGTGGCATACAACCGATGGTgcaccgc < 1:14338/135‑1 (MQ=255) tCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACt > 4:62753/1‑149 (MQ=255) tCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAACG‑CCGGTGGCATACAACCGATGGTgcaccgc > 2:14338/1‑134 (MQ=255) ggCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCa > 2:152792/1‑149 (MQ=255) gCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACGGATGGTGCACCGCACCCAAGTCGATACTCAc < 5:197162/149‑1 (MQ=255) aTCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTc < 1:152792/149‑1 (MQ=255) cAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCa < 7:195690/148‑1 (MQ=255) gTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAg < 4:3793/134‑1 (MQ=255) gTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAg > 3:3793/1‑134 (MQ=255) gACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTgg > 5:249045/1‑149 (MQ=255) ccAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCCCCCACGTCGATACTCACTTCAAGCTCACCCAGGTGCCGGGCg > 4:233180/1‑149 (MQ=255) cAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCgg < 3:62753/149‑1 (MQ=255) aaCAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAg < 8:122630/119‑1 (MQ=255) aaCAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAggg > 6:284313/1‑149 (MQ=255) aCAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAgggg > 3:125459/1‑149 (MQ=255) ccccGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCt > 2:296937/1‑149 (MQ=255) cccGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTg < 6:332837/149‑1 (MQ=255) cccGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCACCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTg < 8:137560/149‑1 (MQ=255) gACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTGATa < 6:249045/149‑1 (MQ=255) aCAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTGATaa < 1:31962/149‑1 (MQ=255) gcgcCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTGATAATcc < 1:296937/149‑1 (MQ=255) cACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCgg > 8:14802/1‑122 (MQ=255) cACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCgg < 7:14802/122‑1 (MQ=255) cACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTGATAATCCAggg < 4:208094/149‑1 (MQ=255) | CCGTGTCGATTTCGTCGGGGCGCGATGATCGGCGGCGGCCAAGGCGCAACGGCTCCTGCCACTGGCCGGCGCCAATGCGGCGGGCGAACTCGGCCATCACTTGCAGATGGCGGGTGACCAGGCGATAGAACAGCCCCGACAGCGCCACTGCCAGCCCACACAGGAACACGCCCATCCACAGCAGGCTGGCAAGG‑CCGGTGGCATACAACCGATGGTGCACCGCACCCAAGTCGATACTCACTTCAAGCTCACCCAGGTGCCTGGCGGGGCCCGAGGGGGGCTGATAATCCAGGG > NC_002947/4255497‑4255790 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |