| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4360251 = | 58 (1.150) | 4 (0.080) | 4/244 | NT | 7.0% | coding (871/1161 nt) | PP_3835 | two‑component system sensor histidine kinase |
| ? | NC_002947 | 4360289 = | 51 (1.070) | coding (833/1161 nt) | PP_3835 | two‑component system sensor histidine kinase | |||||
GCCAAGCTCGATTGACTTGAAGGTGTTGCTGCAACCGGACCTGCCGTTGATCGAGGTGGATGCCGGGCAACTGCAGATGGTGTTGCTCAACCTGTTGTTCAATGCCCGTGATGCCATCGACGGGCATGGCCGCATCAGCCTGACTGTCGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4360402‑4360251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgatgGCATCACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCG > NC_002947/4360289‑4360394 GCCAAGCTCGATTGACTTGAAGGTGTTGCTGCAACCGGACCTGCCGTTGATCGAGGTGGATGCCGGGCAACTGCAGATGGTGTTGCTCAACCTGTTGTTCAATGCCCGTGATGCCATCGACGGGCATGGCCGCATCAGCCTGACTGTC < 1:103191/148‑1 CAAGCTCGATTGACTTGAAGGTGTTGCTGCAACCGGACCTGCCGTTGATCGAGGTGGATGCCGGGCAACTGCAGATGGTGTTGCTCAACCTGTTGTTCAATGCCCGTGATGCCATCGACGGGCATGGCCGCATCAGCCTGACTGTCGAT > 4:202753/1‑149 ATCGACGGGCATGGCCGCATCAGCCTGACTGTCGATGGCATCACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCG < 3:165196/143‑1 ATCGACGGGCATGGCCGCATCAGCCTGACTGTCGATGGCATCACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCG > 4:165196/1‑143 ACGGGCATGGCCGCATCAGCCTGACTGTCGATGGCATCACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACG < 3:202760/103‑1 ACGGGCATGGCCGCATCAGCCTGACTGTCGATGGCATCACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACG > 4:202760/1‑103 GCCAAGCTCGATTGACTTGAAGGTGTTGCTGCAACCGGACCTGCCGTTGATCGAGGTGGATGCCGGGCAACTGCAGATGGTGTTGCTCAACCTGTTGTTCAATGCCCGTGATGCCATCGACGGGCATGGCCGCATCAGCCTGACTGTCGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4360402‑4360251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgatgGCATCACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCG > NC_002947/4360289‑4360394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |