| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4360251 = | 58 (1.150) | 4 (0.080) | 4/244 | NT | 7.0% | coding (871/1161 nt) | PP_3835 | two‑component system sensor histidine kinase |
| ? | NC_002947 | 4360289 = | 51 (1.070) | coding (833/1161 nt) | PP_3835 | two‑component system sensor histidine kinase | |||||
CTTGCCGAAAGGCTTGGTGGTGAAAAACGGCTCGAAGATGCGCGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAAT > NC_002947/4360111‑4360392 | cTTGCCGAAAGGCTTGGTGGTGCAAAACGGCTCGAAGATGCGCGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACa < 8:295386/148‑1 (MQ=255)cTTGCCGAAAGGCTTGGTGGTGAAAAACGGCTCGAAGATGCGCGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGa > 7:295386/1‑146 (MQ=255) ttGCCGAAAGGCTTGGTGGTGAAAAACGGCTCGAAGATGCGCGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGt > 3:187702/1‑149 (MQ=255) tggtggTGAAAAACGGCTCGAAGATGCGCGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCgg > 1:285669/1‑149 (MQ=255) gtggtgAAAAACGGCTCGAAGATGCGCGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGcc < 3:113041/149‑1 (MQ=255) tgAAAAACGGCTCGAAGATGCGCGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCATCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGc < 8:86250/149‑1 (MQ=255) tgAAAAACGGCTCGAAGATGCGCGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGc < 5:285196/149‑1 (MQ=255) cTCGAAGATGCGCGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATgg < 2:285669/149‑1 (MQ=255) tCGAAGATGCGCGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATgg > 6:78005/1‑148 (MQ=255) cgattgacttgaaggtgttgctgcaaccggacctgccgttgatcgaggtggatgccgggcaactgcagatggtgttgctcaacctgttgttcaatgcccgtgatgcCATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGAt > 4:165196‑M1/107‑143 (MQ=255) cgattgacttgaaggtgttgctgcaaccggacctgccgttgatcgaggtggatgccgggcaactgcagatggtgttgctcaacctgttgttcaatgcccgtgatgcCATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGAt < 3:165196‑M1/37‑1 (MQ=255) ggCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTACGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGc < 6:273841/118‑1 (MQ=255) ggCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTACCCCGAACAACTCGACCACATCGACAGTCAGGCTGATGc > 5:273841/1‑118 (MQ=255) tctcTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGaacaa < 1:32172/148‑1 (MQ=255) ctGTGGGTATTCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACGACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGGATC‑ACGGGCATTGAACAACAg < 5:4083/148‑1 (MQ=255) ctGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAgg > 5:266137/1‑149 (MQ=255) tgtgGGTATGCCTTCGCCGCTGTCTTCGACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGaac < 2:313320/142‑1 (MQ=255) tgtgGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGaac > 1:313320/1‑142 (MQ=255) tgGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAgg < 6:266137/146‑1 (MQ=255) tgGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCAATGCCCGT‑GATGCCATCGACGGGc > 7:145264/1‑133 (MQ=255) tgGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCAATGCCCGT‑GATGCCATCGACGGGc < 8:145264/133‑1 (MQ=255) tGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAac < 5:23057/149‑1 (MQ=255) ttCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCa > 3:202753/1‑149 (MQ=255) cgttgatcgaggtggatgccgggcaactgcagatggtgttgctcaacctgttgttcaatgcccgtgatgcCATCGACAGTCAGGCTGATGCGGCCATGCCCGt < 3:202760‑M1/33‑1 (MQ=255) cgttgatcgaggtggatgccgggcaactgcagatggtgttgctcaacctgttgttcaatgcccgtgatgcCATCGACAGTCAGGCTGATGCGGCCATGCCCGt > 4:202760‑M1/71‑103 (MQ=255) ttCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACgg < 6:129596/109‑1 (MQ=255) ttCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACgg > 5:129596/1‑109 (MQ=255) aCCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGc < 4:187702/149‑1 (MQ=255) ccTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGc > 6:6553/1‑148 (MQ=255) cGAAGCGCACGAAGCTGCCCTTCAGCCATTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATc > 1:278474/1‑148 (MQ=255) cACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGa > 2:67149/1‑149 (MQ=255) aCGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGAt > 7:297915/1‑149 (MQ=255) aGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAAc < 1:113134/149‑1 (MQ=255) gccttcatcccatcaACTTCGCCGAACAACTCGACCAAATCGACAGTCATGCTGATTCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGTAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACgg < 1:67149/146‑1 (MQ=255) cccttcagcccttcaACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGc < 5:6553/147‑1 (MQ=255) cttcagcccttcaACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGt > 5:297383/1‑149 (MQ=255) ttcagcccttcaACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTg > 3:254698/1‑99 (MQ=255) ttcagcccttcaACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTg < 4:254698/99‑1 (MQ=255) ttcagcccttcaACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTc > 2:159805/1‑149 (MQ=255) cccttcaACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGtt > 6:85977/1‑149 (MQ=255) cttcaACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCa < 5:222081/138‑1 (MQ=255) cttcaACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCa > 6:222081/1‑138 (MQ=255) cttcaACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTg > 7:150113/1‑148 (MQ=255) ttcaACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACg > 1:284039/1‑134 (MQ=255) ttcaACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACg < 2:284039/134‑1 (MQ=255) ttcaACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCgg < 2:231387/144‑1 (MQ=255) ttcaACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCgg > 1:231387/1‑144 (MQ=255) caACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCTATCAACGGCAGGTCCGGTTtcag < 2:278474/148‑1 (MQ=255) caACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTgca < 5:85977/147‑1 (MQ=255) aaCTTCGCTGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTgcagc > 6:304536/1‑148 (MQ=255) aaCTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTgcagc < 6:297383/148‑1 (MQ=255) gCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACAcc < 1:159805/148‑1 (MQ=255) gAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCt < 6:52505/113‑1 (MQ=255) gAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCt < 6:47668/113‑1 (MQ=255) gAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCt > 5:52505/1‑113 (MQ=255) gAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCt > 5:47668/1‑113 (MQ=255) aacaacTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCaa < 8:150113/149‑1 (MQ=255) acatCGACCACATCGACATTCAGGCTGATGCGTCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTgca < 6:210256/130‑1 (MQ=255) aacTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTAgca > 5:210256/1‑133 (MQ=255) acTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTc > 6:160692/1‑148 (MQ=255) cTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACCCCTTCAAGTCac > 6:231407/1‑148 (MQ=255) tCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAAt > 4:203198/1‑149 (MQ=255) gACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAAt < 5:78005/147‑1 (MQ=255) | CTTGCCGAAAGGCTTGGTGGTGAAAAACGGCTCGAAGATGCGCGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACTCGACCACATCGACAGTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTG‑AGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAAT > NC_002947/4360111‑4360392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |