New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4407748	40 (0.790)	4 (0.080)	4/246	NT	8.2%	coding (96/1299 nt)	PP_3889	putative Phage integrase
	?	NC_002947	= 4407806	52 (1.080)					coding (38/1299 nt)	PP_3889	putative Phage integrase

TGGCGCATCAGGCGCTGACGCAGCGCGGGCAGCTCGGCCAGCACCGCCGCCACGCTCAACTCAGGCCAGCGGGCGATCGGTACCCATTTCTTGCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4407596‑4407748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccgAGGTGCGGCGTCAGGCGACCGACAAGTCGGTGCGCGACCTGCGTGACCCGCGTCACCCCGGCCTGTACCTGCGCTTTTGGAGCAGCCGTGAGCGTGGTACCTGGCACCTGGTGCGCGGCAAGAAATGGGTACCGATCGCCCGCTGG  <  NC_002947/4407806‑4407661                                                                                                                                                                                                                                                                                                             TGGCGCATCAGGCGCTGACGCAGCGCGGGCAGCTCGGCCAGCACCGCCGCCACGCTCAACTCAGGCCAGCGGGCGATCGGTACCCAGTTCTTGCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAG                                                                                                                                                        >  2:152366/1‑149              GCTGACGCAGCGCGGGCAGCTC‑GCCAGCACCGCCGCCACGCTCAACTCAGGCCAGCGGGCGATCGGTACCCATTTCTTGCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGAGGTGCGGCG                                                                                                                                          >  6:143832/1‑149                            GGCAGCTCGGCCAGCACCGCCGCCACGCTCAACTCAGGCCAGCGGGCGATCGGTACCCATTTCTTGCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACA                                                                                                                                                         >  6:5758/1‑121                                              GCCGCCACGCTCAACTCAGGCCAGCGGGCGATCGGTACCCATTTCTTGCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGAGGTGCGGCGTCAGGCGACCGACAAGTCGGTGCGCGACCTG                                                                                                           >  2:173148/1‑149                                                                 GCCAGCGGGCGATCGGTAGCCATTTCTTGCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGAGGTGCGGCGTCAGGCGACCGACAAGTCGGTGCGCGACCTGCGTGACCCGCGTCACCCCG                                                                                        <  1:173148/149‑1                                                                   CAGCGGGCGATCGGTACCCATTTCTTGCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGAGGTGCGGCGTCAGGCGACCGACAAGTCGGTGCGCGACCTGCGTGACCCGCGTCACCCCGGC                                                                                      <  5:143832/149‑1                                                                                                                                                       CCGAGGGGCGGCGTCAGGCGACCGACAAGTCGGTGCGCGACCTGCGTGACCCGCGGCACCCCGGCCTGTACCTGCGCTTTTGGAGCAGCCGTGAGCGTGGTACCTGGCACCTGGTGCGCGGCAAGAAATGGGTACCGATCGCCCGCTGG  <  8:285839/149‑1                                                                                                                                                                                                                                                                                                             TGGCGCATCAGGCGCTGACGCAGCGCGGGCAGCTCGGCCAGCACCGCCGCCACGCTCAACTCAGGCCAGCGGGCGATCGGTACCCATTTCTTGCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4407596‑4407748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccgAGGTGCGGCGTCAGGCGACCGACAAGTCGGTGCGCGACCTGCGTGACCCGCGTCACCCCGGCCTGTACCTGCGCTTTTGGAGCAGCCGTGAGCGTGGTACCTGGCACCTGGTGCGCGGCAAGAAATGGGTACCGATCGCCCGCTGG  <  NC_002947/4407806‑4407661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.