New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4407748	40 (0.790)	4 (0.080)	4/246	NT	8.2%	coding (96/1299 nt)	PP_3889	putative Phage integrase
	?	NC_002947	= 4407806	52 (1.080)					coding (38/1299 nt)	PP_3889	putative Phage integrase

AGGCCAGCGGGCGATCGGTACCCATTTCTTGCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTAATTCTCGTTCGTCAGCTGCTGCAGGT  >  NC_002947/4407658‑4407952                                                                                                                                                       |                                                                                                                                                   aGGCCAGCGGGCGATCGGTACCCATTTCTTGCCGAGCACCAGGTGCCAGGTACCACGCTCACCGCTGCTCCAAAAGCGCAGGTACACGCCGCGGTGAAGC‑GGGTCACGAAGGACGCGCACCGACTTGTCGTTCGCCTGACGCCGCACC‑t                                                                                                                                                    >  7:57769/1‑149 (MQ=255)    ccAGCGGGCGATCGGTACCCATTTCTTGCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGGGGTGCCGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCCCC‑Tcgg                                                                                                                                                 <  8:285839‑M2/149‑4 (MQ=255)         gggCGATCGGTACCCATTTCTTGCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCg                                                                                                                                            <  6:49616/149‑1 (MQ=255)                      ccATTTCTTGCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGc                                                                                                                                           <  6:209227/137‑1 (MQ=255)                      ccATTTCTTGCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGc                                                                                                                                           >  5:209227/1‑137 (MQ=255)                               gCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTcg                                                                                                                      >  1:149374/1‑149 (MQ=255)                               gCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTAGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCggg                                                                                                                         <  7:2041/146‑1 (MQ=255)                                  gcgcACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCgcgc                                                                                                                   <  3:25464/149‑1 (MQ=255)                                                  gTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCTCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCt                                                                                                                  <  5:16779/134‑1 (MQ=255)                                                  gTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCt                                                                                                                  >  6:16779/1‑134 (MQ=255)                                                      cACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCgg                                                                                               >  2:256490/1‑149 (MQ=255)                                                           tCACGGCTGATCCAAAAGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCag                                                                                           >  5:324227/1‑148 (MQ=255)                                                                 ctgctCCAAAAGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCaggaggagg                                                                                    <  6:266459/149‑1 (MQ=255)                                                                    ctCCAAAAGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAg                                                                                 >  1:266167/1‑149 (MQ=255)                                                                    ctCCAAAAGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGGCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGt                                                                                   <  3:82546/147‑1 (MQ=255)                                                                        aaaaGCGCAGGTACAGGCCGGGGTGACGCTGGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCgg                                                                                               >  1:24043/1‑132 (MQ=255)                                                                        aaaaGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCgg                                                                                               <  2:24043/131‑1 (MQ=255)                                                                        aaaaGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCAc                                                                             <  5:49248/149‑1 (MQ=255)                                                                        aaaaGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCAc                                                                             >  4:153436/1‑149 (MQ=255)                                                                           aGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGa                                                                          >  8:278035/1‑149 (MQ=255)                                                                                aGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCTCTCATGCGGCCACCTTGGCGGGCAGGAGGAGGTAGGCACGGATg                                                                        <  1:61045/146‑1 (MQ=255)                                                                                aGGTACAGGCCGGGGTGACGA‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGACGAGGTAGGCACGCATg                                                                        >  2:61045/1‑146 (MQ=255)                                                                                    aCAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGAAGGccgcca                                                                 >  7:45829/1‑145 (MQ=255)                                                                                        gCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑Tcggcctgtacctgcgcttttggagcagccgtgagcgtggtacctggcacctggtgcgcggcaagaaatgggtaccgatcgcccgctg                                                             <  5:143832‑M2/149‑88 (MQ=255)                                                                                        gCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGc                                                             >  3:176307/1‑149 (MQ=255)                                                                                          cGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑Tcggcctgtacctgcgcttttggagcagccgtgagcgtggtacctggcacctggtgcgcggcaagaaatggctaccgatcgcccgctggc                                                           <  1:173148‑M2/149‑90 (MQ=255)                                                                                             ggTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGa                                                        >  6:217315/1‑149 (MQ=255)                                                                                             ggTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGa                                                        <  4:176307/149‑1 (MQ=255)                                                                                                 aCGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGAtgct                                                    >  5:88620/1‑149 (MQ=255)                                                                                                   gc‑gGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACCGTCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGAtgctg                                                   >  1:80314/1‑149 (MQ=255)                                                                                                          cACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCgg                                             >  6:303935/1‑148 (MQ=255)                                                                                                           aCGCAGGTCGCGCACCGACTTCTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGca                                           <  2:80314/149‑1 (MQ=255)                                                                                                             gCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGcaca                                         >  8:86727/1‑149 (MQ=255)                                                                                                              cAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑Tcggcctgtacctgcgcttttggagcagccgtgagcgtggtacctggcacctggtgcgcggcaagaaatgggtaccgatcgcccgctggcctgagttgagcgtggcggc                                        >  2:173148‑M2/1‑41 (MQ=255)                                                                                                               aGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCacac                                        >  4:156002/1‑148 (MQ=255)                                                                                                                 gTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGAt                                     <  1:256490/149‑1 (MQ=255)                                                                                                                  tCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATg                                    <  2:266167/149‑1 (MQ=255)                                                                                                                    gcgcACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGc                                  <  6:88620/149‑1 (MQ=255)                                                                                                                       cACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAg                               <  5:48413/149‑1 (MQ=255)                                                                                                                         ccGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCTCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAgg                              >  2:301032/1‑148 (MQ=255)                                                                                                                           gACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTaa                           <  1:152366/149‑1 (MQ=255)                                                                                                                            aCTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTAAt                          >  5:110736/1‑149 (MQ=255)                                                                                                                              ttGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTAATtc                        >  3:23788/1‑149 (MQ=255)                                                                                                                                gtcggtcgCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGGGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTAATtc                        <  6:324227/147‑1 (MQ=255)                                                                                                                                gtcggtcgCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCg                                                            >  1:295291/1‑111 (MQ=255)                                                                                                                                gtcggtcgCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCg                                                            <  2:295291/111‑1 (MQ=255)                                                                                                                                gtcggtcgCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTAATtct                       <  2:149374/148‑1 (MQ=255)                                                                                                                                 tcggtcgCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCg                                                                                                <  4:108535/74‑1 (MQ=255)                                                                                                                                 tcggtcgCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCg                                                                                                >  3:108535/1‑74 (MQ=255)                                                                                                                                  cggtcgCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTAATTCtcgt                    >  6:203099/1‑149 (MQ=255)                                                                                                                                   ggtcgCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTAATTCtcgt                    <  5:303935/148‑1 (MQ=255)                                                                                                                                    gtcgCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTAATTCtcgttc                  >  8:14691/1‑149 (MQ=255)                                                                                                                                    gtcgCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTAATTCtcgttc                  <  7:86727/149‑1 (MQ=255)                                                                                                                                     tcgCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTAATTCtcgttcg                 >  7:100256/1‑149 (MQ=255)                                                                                                                                         cTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCgg                                             >  4:221387/1‑117 (MQ=255)                                                                                                                                         cTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCgg                                             <  3:221387/117‑1 (MQ=255)                                                                                                                                         cTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGc                                            >  8:96160/1‑118 (MQ=255)                                                                                                                                         cTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGc                                            <  7:96160/118‑1 (MQ=255)                                                                                                                                          tGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTAATTCTCGTTCGTCAgc            >  3:232173/1‑149 (MQ=255)                                                                                                                                           gACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTAATTCTCGTTCGTCAgct           >  8:80036/1‑149 (MQ=255)                                                                                                                                             cgccgcACC‑Tcggcctgtacctgcgcttttggagcagccgtgagcgtggtacctggcacctggtgcgcggcaagaaatgggtaccgatcgcccgctggcctgagttgagcgtggcggcggtgctggcgagctgcccgcgctgcgtcagc         >  6:143832‑M2/1‑10 (MQ=255)                                                                                                                                                    cc‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGcaca                                         <  3:234020/110‑1 (MQ=255)                                                                                                                                                    cc‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGcaca                                         >  4:234020/1‑110 (MQ=255)                                                                                                                                                    cc‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTAATTCTCGTTCGTCAGCTGCTGCAGGt  <  7:278035/149‑1 (MQ=255)                                                                                                                                                     c‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTAATTCTCGTTCGTCAGCTGCTGCAgg   >  8:193537/1‑147 (MQ=255)                                                                                                                                                       |                                                                                                                                                   AGGCCAGCGGGCGATCGGTACCCATTTCTTGCCGCGCACCAGGTGCCAGGTACCACGCTCACGGCTGCTCCAAAAGCGCAGGTACAGGCCGGGGTGACGC‑GGGTCACGCAGGTCGCGCACCGACTTGTCGGTCGCCTGACGCCGCACC‑TCGGCCTCGCTCAACTTCACTTCGCGGGTCGCGCTCATGCGGCCACCGTGGCGGGCAGGAGGAGGTAGGCACGGATGGCCTCGACGGCGTCGATGCTGCCCCGGCACACGATGGCCAGGTAATTCTCGTTCGTCAGCTGCTGCAGGT  >  NC_002947/4407658‑4407952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.