| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4453208 = | 72 (1.430) | 3 (0.060) | 3/238 | NT | 5.4% | coding (2812/3564 nt) | nicB | nicotinate dehydrogenase subunit B |
| ? | NC_002947 | 4453309 = | 38 (0.820) | coding (2913/3564 nt) | nicB | nicotinate dehydrogenase subunit B | |||||
ACCATGCCGCCAGCAAGGTAGCTGCTACCGCCTTTTTCTGCGCCCATCAGGTTGCGCGGCGAATGGCAGGCCGTGCAGTGGCCCAGGCCGTCGACCAGGTAGGCACCGCGGTTCCACTGCGCGCTGCGCTGCGGGTCGGGCTGGTATTCGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4453362‑4453208‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgccgcgCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCACCGG > NC_002947/4453309‑4453452 ACCATGCCGCCAGCAAGGTAGCTGCTACCGCCTTTTTCTGCGCCCATCAGGTTGCGCGGCGAATGGCAGGCCGTGCAGTGGCCCAGGCCGTCGACCAGGTAGGCACCGCGGTTCCACTGCGCGCTGCGCTGCGGGTCGGGCTGGTATTC > 5:80489/1‑149ACCATGCCGCCAGCAAGGTAGCTGCTACCGCCTTTTTCTGCGCCCATCAGGTTGCGCGGCGAATGGCAGGCCGTGCAGTGGCCCAGGCCGTCGACCAGGTAGGCACCGCGGTTCCACTGCGCGCTGCGCTGCGGGTCGGGCTGGTATTC > 6:307788/1‑149 GCGGCGAATGGCAGGCCGTGCAGTGGCCCAGGCCGTCGACCAGGTAGGCACCGCGGTTCCACTGCGCGCTGCGCTGCGGGTCGGGCTGGTATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGG > 4:90007/1‑148 GGCGAATGGCAGGCCGTGCAGTGGCCCAGGCCGTCGACCAGGTAGGCACCGCGGTTCCACTGCGCGCTGCGCTGCGGGTCGGGCTGGTATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCAT > 3:82299/1‑149 CCAGGCCGTCGACCAGGTAGGCACCGCGGTTCCACTGCGCGCTGCGCTGCGGGTCGGGCTGGTATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCC < 3:90007/149‑1 TTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCA > 4:73173/1‑149 TTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCA > 5:155749/1‑149 TTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCA > 5:272631/1‑149 GCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCACCG > 7:176075/1‑149 CCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCACCGG < 6:92029/149‑1 CGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAA < 3:246586/95‑1 CGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAA > 4:246586/1‑95 ACCATGCCGCCAGCAAGGTAGCTGCTACCGCCTTTTTCTGCGCCCATCAGGTTGCGCGGCGAATGGCAGGCCGTGCAGTGGCCCAGGCCGTCGACCAGGTAGGCACCGCGGTTCCACTGCGCGCTGCGCTGCGGGTCGGGCTGGTATTCGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4453362‑4453208‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgccgcgCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCACCGG > NC_002947/4453309‑4453452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |