New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4453208 = | 72 (1.430) | 3 (0.060) | 3/238 | NT | 5.4% | coding (2812/3564 nt) | nicB | nicotinate dehydrogenase subunit B |
? | NC_002947 | 4453309 = | 38 (0.820) | coding (2913/3564 nt) | nicB | nicotinate dehydrogenase subunit B |
AACCAGCGGCCGCTGATGGCCGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCACCGG > NC_002947/4453163‑4453452 | aaCCAGCGGCCGCTGATGGCCGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCaa > 5:307788/1‑149 (MQ=255) aCCAGCGGCCGCTGATGGCCGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑c < 1:201195/149‑1 (MQ=255) aCCAGCGGCCGCTGATGGCCGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑c > 8:276603/1‑149 (MQ=255) aTGGCCGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAg < 1:217195/148‑1 (MQ=255) gCCGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGaaa > 6:80489/1‑148 (MQ=255) ccGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGaaaaa < 7:276603/149‑1 (MQ=255) cGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAg > 5:127937/1‑149 (MQ=255) cGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAg > 8:229634/1‑149 (MQ=255) gAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGc > 5:52041/1‑145 (MQ=255) gAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGc < 6:52041/145‑1 (MQ=255) cgcgGTTTCTGCAACTCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCGCTTCGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTagc < 1:99897/148‑1 (MQ=255) gcgGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTagcagc > 5:92029/1‑148 (MQ=255) gcgGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCt < 6:121856/149‑1 (MQ=255) tttCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCt < 3:191558/149‑1 (MQ=255) tGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCGA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCt > 8:281351/1‑149 (MQ=255) aaCGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTggc < 4:223677/149‑1 (MQ=255) aCGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTggcg < 7:229634/149‑1 (MQ=255) gcggcgaatggcaggccgtgcagtggcccaggccgtcgaccaggtaggcaccgcggttccactgcgcgctgcgctgcgggtcgggctggtattcgccgcgCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTggcgg > 4:90007‑M2/101‑148 (MQ=255) ggcgaatggcaggccgtgcagtggcccaggccgtcgaccaggtaggcaccgcggttccactgcgcgctgcgctgcgggtcgggctggtattcgccgcgCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCAt > 3:82299‑M2/99‑149 (MQ=255) GAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGt > 6:307788‑M1/1‑149 (MQ=255) GAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGt > 5:80489‑M1/1‑149 (MQ=255) aCCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑a < 1:246290/149‑1 (MQ=255) aCCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑At > 4:287445/1‑149 (MQ=255) cccGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTg < 7:120354/149‑1 (MQ=255) cGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTggg < 4:114036/149‑1 (MQ=255) gACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGa < 4:159262/149‑1 (MQ=255) ccGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGc > 4:291035/1‑149 (MQ=255) ccaggccgtcgaccaggtaggcaccgcggttccactgcgcgctgcgctgcgggtcgggctggtattcgccgcgCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGcc < 3:90007‑M2/76‑1 (MQ=255) gcAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATg > 8:305452/1‑149 (MQ=255) gTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCATGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGccc < 6:169681/149‑1 (MQ=255) gTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCTGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGccc < 1:144/149‑1 (MQ=255) aaCCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCTA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTggg < 7:281351/149‑1 (MQ=255) aaCCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGa > 8:246588/1‑139 (MQ=255) aaCCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGa < 7:246588/139‑1 (MQ=255) cgGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGt < 6:127937/149‑1 (MQ=255) tACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGAc > 2:246283/1‑149 (MQ=255) tGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATgg > 1:145580/1‑96 (MQ=255) tGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATgg < 2:145580/96‑1 (MQ=255) tGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGcc > 6:328042/1‑128 (MQ=255) gTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCg < 3:291035/147‑1 (MQ=255) tCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTgg < 2:64509/149‑1 (MQ=255) tCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTgg < 7:305452/149‑1 (MQ=255) ggCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCg > 8:288927/1‑148 (MQ=255) gCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGaa < 3:287445/149‑1 (MQ=255) cACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAgtt > 3:70529/1‑149 (MQ=255) aCTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCAGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAgttg > 1:242659/1‑149 (MQ=255) ccATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCt > 3:252365/1‑147 (MQ=255) aTTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGAACGGCTGGGGGACCCCGCCCGGGAAAGCCCGCGGCAAGTCAGCGCCCCGGGGGAGCGAAGACGCGTGGTTCACCTCCCGCac > 1:262088/1‑148 (MQ=255) ttcgccgcgCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCa > 5:272631‑M2/10‑149 (MQ=255) ttcgccgcgCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCa > 4:73173‑M2/10‑149 (MQ=255) ttcgccgcgCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCa > 5:155749‑M2/10‑149 (MQ=255) gccgcgCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCACCg > 7:176075‑M2/7‑149 (MQ=255) ccgcgCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCACCgg < 6:92029‑M2/144‑1 (MQ=255) cgCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCaa < 3:246586‑M2/93‑1 (MQ=255) cgCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCaa > 4:246586‑M2/3‑95 (MQ=255) | AACCAGCGGCCGCTGATGGCCGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAA‑CCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCG‑ATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCACCGG > NC_002947/4453163‑4453452 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |