New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4453208 =72 (1.430)3 (0.060) 3/238 NT 5.4% coding (2812/3564 nt) nicB nicotinate dehydrogenase subunit B
?NC_002947 4453309 = 38 (0.820)coding (2913/3564 nt) nicB nicotinate dehydrogenase subunit B

AACCAGCGGCCGCTGATGGCCGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCACCGG  >  NC_002947/4453163‑4453452
                                                                                                                                                    |                                                                                                                                                 
aaCCAGCGGCCGCTGATGGCCGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCaa                                                                                                                                                 >  5:307788/1‑149 (MQ=255)
 aCCAGCGGCCGCTGATGGCCGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAAc                                                                                                                                               <  1:201195/149‑1 (MQ=255)
 aCCAGCGGCCGCTGATGGCCGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAAc                                                                                                                                               >  8:276603/1‑149 (MQ=255)
               aTGGCCGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAg                                                                                                                                  <  1:217195/148‑1 (MQ=255)
                  gCCGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGaaa                                                                                                                               >  6:80489/1‑148 (MQ=255)
                   ccGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGaaaaa                                                                                                                             <  7:276603/149‑1 (MQ=255)
                    cGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAg                                                                                                                            >  5:127937/1‑149 (MQ=255)
                    cGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAg                                                                                                                            >  8:229634/1‑149 (MQ=255)
                          gAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGc                                                                                                                          >  5:52041/1‑145 (MQ=255)
                          gAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGc                                                                                                                          <  6:52041/145‑1 (MQ=255)
                               cgcgGTTTCTGCAACTCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCGCTTCGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTagc                                                                                                                    <  1:99897/148‑1 (MQ=255)
                                gcgGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTagcagc                                                                                                                 >  5:92029/1‑148 (MQ=255)
                                gcgGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCt                                                                                                                <  6:121856/149‑1 (MQ=255)
                                    tttCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCt                                                                                                            <  3:191558/149‑1 (MQ=255)
                                        tGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCGACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCt                                                                                                        >  8:281351/1‑149 (MQ=255)
                                           aaCGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTggc                                                                                                     <  4:223677/149‑1 (MQ=255)
                                            aCGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTggcg                                                                                                    <  7:229634/149‑1 (MQ=255)
                                                gcggcgaatggcaggccgtgcagtggcccaggccgtcgaccaggtaggcaccgcggttccactgcgcgctgcgctgcgggtcgggctggtattcgccgcgCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTggcgg                                                                                                   >  4:90007‑M2/101‑148 (MQ=255)
                                                  ggcgaatggcaggccgtgcagtggcccaggccgtcgaccaggtaggcaccgcggttccactgcgcgctgcgctgcgggtcgggctggtattcgccgcgCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCAt                                                                                                >  3:82299‑M2/99‑149 (MQ=255)
                                                   GAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGt                                                                                             >  6:307788‑M1/1‑149 (MQ=255)
                                                   GAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGt                                                                                             >  5:80489‑M1/1‑149 (MQ=255)
                                                       aCCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGa                                                                                         <  1:246290/149‑1 (MQ=255)
                                                       aCCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGAt                                                                                        >  4:287445/1‑149 (MQ=255)
                                                            cccGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTg                                                                                   <  7:120354/149‑1 (MQ=255)
                                                              cGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTggg                                                                                 <  4:114036/149‑1 (MQ=255)
                                                               gACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGa                                                                                <  4:159262/149‑1 (MQ=255)
                                                                  ccGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGc                                                                             >  4:291035/1‑149 (MQ=255)
                                                                           ccaggccgtcgaccaggtaggcaccgcggttccactgcgcgctgcgctgcgggtcgggctggtattcgccgcgCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGcc                                                                      <  3:90007‑M2/76‑1 (MQ=255)
                                                                                gcAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATg                                                               >  8:305452/1‑149 (MQ=255)
                                                                                   gTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCATGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGccc                                                            <  6:169681/149‑1 (MQ=255)
                                                                                   gTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCTGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGccc                                                            <  1:144/149‑1 (MQ=255)
                                                                                       aaCCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCTACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTggg                                                        <  7:281351/149‑1 (MQ=255)
                                                                                       aaCCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGa                                                                  >  8:246588/1‑139 (MQ=255)
                                                                                       aaCCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGa                                                                  <  7:246588/139‑1 (MQ=255)
                                                                                            cgGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGt                                                   <  6:127937/149‑1 (MQ=255)
                                                                                                   tACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGAc                                            >  2:246283/1‑149 (MQ=255)
                                                                                                       tGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATgg                                                                                              >  1:145580/1‑96 (MQ=255)
                                                                                                       tGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATgg                                                                                              <  2:145580/96‑1 (MQ=255)
                                                                                                       tGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGcc                                                             >  6:328042/1‑128 (MQ=255)
                                                                                                         gTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCg                                        <  3:291035/147‑1 (MQ=255)
                                                                                                          tCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTgg                                     <  2:64509/149‑1 (MQ=255)
                                                                                                          tCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTgg                                     <  7:305452/149‑1 (MQ=255)
                                                                                                                 ggCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCg                                 >  8:288927/1‑148 (MQ=255)
                                                                                                                  gCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGaa                               <  3:287445/149‑1 (MQ=255)
                                                                                                                          cACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAgtt                       >  3:70529/1‑149 (MQ=255)
                                                                                                                           aCTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCAGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAgttg                      >  1:242659/1‑149 (MQ=255)
                                                                                                                                        ccATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCt           >  3:252365/1‑147 (MQ=255)
                                                                                                                                          aTTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGAACGGCTGGGGGACCCCGCCCGGGAAAGCCCGCGGCAAGTCAGCGCCCCGGGGGAGCGAAGACGCGTGGTTCACCTCCCGCac        >  1:262088/1‑148 (MQ=255)
                                                                                                                                           ttcgccgcgCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCa      >  5:272631‑M2/10‑149 (MQ=255)
                                                                                                                                           ttcgccgcgCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCa      >  4:73173‑M2/10‑149 (MQ=255)
                                                                                                                                           ttcgccgcgCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCa      >  5:155749‑M2/10‑149 (MQ=255)
                                                                                                                                              gccgcgCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCACCg   >  7:176075‑M2/7‑149 (MQ=255)
                                                                                                                                               ccgcgCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCACCgg  <  6:92029‑M2/144‑1 (MQ=255)
                                                                                                                                                  cgCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCaa                                                     <  3:246586‑M2/93‑1 (MQ=255)
                                                                                                                                                  cgCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCaa                                                     >  4:246586‑M2/3‑95 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
AACCAGCGGCCGCTGATGGCCGGCTGGAATGCGCGGTTTCTGCAACGCGGCGAATACCAGCCCGACCCGCAGCGCAGCGCGCAGTGGAACCGCGGTGCCTACCTGGTCG‑‑ACGGCCTGGGCCACTGCACGGCCTGCCATTCGCCGCGCAACCTGATGGGCGCAGAAAAAGGCGGTAGCAGCTACCTTGCTGGCGGCATGGTCGATGGCTGGGAGGCCCCGGCCTTGAATGCCCTGGGCAAGTCATCGACGCCGTGGAGCGAAGACGAGTTGTTCAACTACCTCAGCACCGG  >  NC_002947/4453163‑4453452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.