| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4586029 | 19 (0.380) | 17 (0.370) | 10/236 | NT | 50.5% | intergenic (+112/+103) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | = 4586109 | 16 (0.350) | intergenic (+192/+23) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
AGTGGGCGACCCGCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4585875‑4586029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggc‑ctctTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCCGCATTCAAGGCCGGCAC‑GTCCCTGGTAGGAGCGGGTTTA‑CCGCAGAGAGGCCGGCCCGATCAATGCAAGATCTTCACCTTGCCAAGCACCCGGTCATCCTCAACC < NC_002947/4586109‑4585970 AGTGGGCGACCCGCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCG < 8:246825/149‑1AGTGGGCGACCCGCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCG > 7:180261/1‑149 TGGGCGACCCGCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC > 6:162633/1‑149 CGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTTCATTGATCGGGCCGGC‑CTCTTCGCGGGT < 1:18884/149‑1 CAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGGTAAACC > 6:235139/1‑149 AGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGGTAAACCC > 4:67362/1‑149 GACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGgcctt < 5:235139/148‑6 ACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGgccttga < 8:225680/149‑8 GTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCCGCATTCAAGGCCGGCAC‑Ggtcc < 5:162633/149‑5 TGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCCGCATTCAAGGCCGGCAC‑Ggtccc < 5:213861/149‑6 TGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGAGGGTAAACCCGCTCCTACCAGGGGCAGCGCCGCATTCAAGGCCGGCAC‑Ggtccc < 5:209210/149‑6 CAGCTGATCTGCGTTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCCGCATTCAAGGCCGGCACGGTCCCTGG > 3:311607/1‑148 AGCTGATCTGCGTTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCCGCATTCAAGGCCGGCACGGTCCCTGGTA < 4:311607/149‑1 AGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCCGCATTCAAGGCCGGCACGGTCCCTGGTA < 6:253855/149‑1 TCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGGTAAAC > 5:3872/1‑92 TCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGGTAAAC < 6:3872/92‑1 TTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCCGCATTCAAGGCCGGCACGGTCCCTGGTAG > 7:57117/1‑130 TTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCCGCATTCAAGGCCGGCACGGTCCCTGGTAG < 8:57117/130‑1 TGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCGCTCTTCCCGGGTAAACCCGa > 1:209736/1‑55 TGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGGTAAACCCGC < 2:209736/55‑1 TCGGGCCGGC‑CTCTTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCCGCATTCAAGGCCGGCACGGTCCCTG > 6:176509/1‑74 TCGGGCCGGC‑CTCTTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCCGCATTCAAGGCCGGCACGGTCCCTG < 5:176509/74‑1 GGC‑CTCTTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCCGCATTCAAGGCCGGCACGGTCCCTGGTAGGAGCGGGTTTATCCGCGAAGAGGCCGGCCCGATCAATGCAAGATCTTCACCTTGCCAAGCACCCGGTCATCCTCAACC > 8:180261/1‑149 TCTTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCCGCATTCAAGGCCGGCACGGTCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCGATCAATGCAAGATCTTCACCTTGCCAAGCACC < 4:236461/130‑1 TCTTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCCGCATTCAAGGCCGGCACGGTCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCGATCAATGCAAGATCTTCACCTTGCCAAGCACC > 3:236461/1‑130 AGTGGGCGACCCGCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4585875‑4586029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggc‑ctctTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCCGCATTCAAGGCCGGCAC‑GTCCCTGGTAGGAGCGGGTTTA‑CCGCAGAGAGGCCGGCCCGATCAATGCAAGATCTTCACCTTGCCAAGCACCCGGTCATCCTCAACC < NC_002947/4586109‑4585970 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |