| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4586029 | 19 (0.380) | 17 (0.370) | 10/236 | NT | 50.5% | intergenic (+112/+103) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | = 4586109 | 16 (0.350) | intergenic (+192/+23) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
CGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTCTGC‑GG‑TAAACCCGCTCCTACCAGGGA‑C‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACT > NC_002947/4585889‑4586167 | cgAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTTCATTGATCGGGCCGGC‑CTCTtcgcgggt < 1:18884‑M1/149‑9 (MQ=255) cAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTtcgcgggtaaacc > 6:235139‑M1/1‑136 (MQ=255) aGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTtcgcgggtaaaccc > 4:67362‑M1/1‑135 (MQ=255) gACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTtcgcgggtaaacccgctcctaccagggaccgtgccggcctt < 5:235139‑M1/148‑42 (MQ=255) aCCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTtcgcgggtaaacccgctcctaccagggaccgtgccggccttga < 8:225680‑M1/149‑44 (MQ=255) cACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAAt > 5:23782/1‑149 (MQ=39) gCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATgcgg < 6:23782/149‑1 (MQ=39) gCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGGTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATgcgg < 1:135161/149‑1 (MQ=38) cGGCGTGAACAGCTGATATGCGCTGCTACATTGAAAGGTTGAGGATGAAAGGGTGCTTGGCAAGGTGAAGATATTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACAAGGTACC‑GTGCCGGCCGGGAATGCGGCGCt > 8:215360/1‑149 (MQ=25) gTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtcc < 5:162633‑M1/149‑58 (MQ=255) tGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccc < 5:213861‑M1/149‑59 (MQ=255) tGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTtcgagggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccc < 5:209210‑M1/149‑59 (MQ=255) cAGCTGATCTGCGTTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctgg > 3:311607‑M1/1‑87 (MQ=255) aGCTGATCTGCGTTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggta < 4:311607‑M1/149‑64 (MQ=255) aGCTGATCTGCGCTGCTCCATTGAAAGGTTGCGGATGACCGGGTGCTTGGCAAGGTGAAGATCATGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTa < 7:70556/149‑1 (MQ=38) aGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggta < 6:253855‑M1/149‑64 (MQ=255) gCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAg < 3:67362/149‑1 (MQ=39) cTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTgg < 6:191517/145‑1 (MQ=38) cTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTgg > 5:191517/1‑145 (MQ=38) tCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTtcgcgggtaaac < 6:3872‑M1/92‑13 (MQ=255) tCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTtcgcgggtaaac > 5:3872‑M1/1‑80 (MQ=255) ctctgctCACTTGAAAGGTTTCGGATGACCGGGTGCTTGTCAAGGTGAAGATCTTGCATTGCTCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCCGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCggg < 6:329813/145‑1 (MQ=37) ctCCATTGCAAGGTTGAGGATGACCGGGGGCTTGGCAAGGGGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTAc < 7:215360/147‑1 (MQ=37) ctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTAc < 6:305149/147‑1 (MQ=38) aTTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAg < 7:34025/131‑1 (MQ=38) aTTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAg > 8:34025/1‑131 (MQ=38) ttGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggtag > 7:57117‑M1/1‑66 (MQ=255) ttGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggtag < 8:57117‑M1/130‑65 (MQ=255) ggTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGa < 2:203041/142‑1 (MQ=38) ggTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGa > 1:203041/1‑142 (MQ=38) ggTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGC‑GGATAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagaggcc > 8:180261‑M2/1‑142 (MQ=255) ggTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGC‑GGGTAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAaga < 4:236461‑M2/130‑4 (MQ=255) ggTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGC‑GGGTAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAaga > 3:236461‑M2/1‑127 (MQ=255) ttGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGcccc < 3:217805/98‑1 (MQ=25) ttGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGcccc > 4:217805/1‑98 (MQ=25) tGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCGCTCTtcccgggtaaacccga > 1:209736‑M1/1‑40 (MQ=255) tGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTtcgcgggtaaacccgc < 2:209736‑M1/55‑17 (MQ=255) gTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATgcgg < 6:253859/81‑1 (MQ=21) gTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATgcgg > 5:253859/1‑81 (MQ=21) tCGGGCCGGC‑CTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctg > 6:176509‑M1/1‑14 (MQ=255) tCGGGCCGGC‑CTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctg < 5:176509‑M1/74‑61 (MQ=255) ggc‑cTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttatccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacc > 8:180261‑M1/1‑7 (MQ=255) tcttcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacc < 4:236461‑M1/130‑128 (MQ=255) tcttcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacc > 3:236461‑M1/1‑3 (MQ=255) | CGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGC‑CTCTCTGC‑GG‑TAAACCCGCTCCTACCAGGGA‑C‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACT > NC_002947/4585889‑4586167 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |