New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5080220 = | 54 (1.070) | 3 (0.060) | 3/242 | NT | 6.2% | intergenic (‑85/+83) | csrA/lysC | carbon storage regulator/aspartokinase |
? | NC_002947 | 5080257 = | 40 (0.850) | intergenic (‑122/+46) | csrA/lysC | carbon storage regulator/aspartokinase |
CCTGGAGCTGGCCGTACGCGCGCTGCATACCGCGTTCGATCTGGATGCTCCTGCCCGACAGGGCGAGTAAGGCGCTGCCTGGAAGGGCGCGGCTTGCCGCGCCCTTCGCGTTTCTGCTCGCCGCGCAGGTCCTGTCCTGCCTTGTGCGGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5080372‑5080220 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgagCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAACCTTGA > NC_002947/5080257‑5080403 CCTGGAGCTGGCCGTACGCGCGCTGCATACCGCGTTCGATCTGGATGCTCCTGCCCGACAGGGCGAGTAAGGCGCTGCCTGGAAGGGCGCGGCTTGCCGCGCCCTTCGCGTTTCTGCTCGCCGCGCAGGTCCTGTCCTGCCTTGTGCGG > 8:289764/1‑149 GGAGCTGGCCGTACGCGCGCTGCATACCGCGTTCGATCTGGATGCTCCTGCCCGACAGGGCGAGTAAGGCGCTGCCTGGAAGGGCGCGGCTTGCCGCGCCCTTCGCGTTTCTGCTCGCCGCGCAGGTCCTGTCCTGCCTTGTGCGGC > 2:173555/1‑147 GAGCTGGCCGTACGCGCGCTGCATACCGCGTTCGATCTGGATGCTCCTGCCCGACAGGGCGAGTAAGGCGCTGCCTGGAAGGGCGCGGCTTGCCGCGCCCTTCGCGTTTCTGCTCGCCGCGCAGGTCCTGTCCTGCCTTGTGCGGCGA < 4:146794/148‑1 GAGCTGGCCGTACGCGCGCTGCATACCGCGTTCGATCTGGATGCTCCTGCCCGACAGGGCGAGTAAGGCGCTGCCTGGAAGGGCGCGGCTTGCCGCGCCCTTCGCGTTTCTGCTCGCCGCGCAGGTCCTGTCCTGCCTTGTGCGGCGA < 7:158193/148‑1 TTTCTGCTCGCCGCGCAGGTCCTGTCCTGCCTTGTGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGC > 8:155203/1‑149 GTCCTGTCCTGCCTTGTGCGGCGAGCAGAAACGCGAAGAGCGCGGCAAGCCGCGCCCTTCCA > 5:48287/1‑62 GTCCTGTCCTGCCTTGTGCGGCGAGCAGAAACGCGAAGAGCGCGGCAAGCCGCGCCCTTCCA < 6:48287/62‑1 GCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGC > 3:201634/1‑139 GCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGC < 4:201634/139‑1 CGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAAC < 2:88294/149‑1 AGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAACCTTGA < 8:158193/149‑1 CCTGGAGCTGGCCGTACGCGCGCTGCATACCGCGTTCGATCTGGATGCTCCTGCCCGACAGGGCGAGTAAGGCGCTGCCTGGAAGGGCGCGGCTTGCCGCGCCCTTCGCGTTTCTGCTCGCCGCGCAGGTCCTGTCCTGCCTTGTGCGGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5080372‑5080220 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgagCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAACCTTGA > NC_002947/5080257‑5080403 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |