New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5080220 = | 54 (1.070) | 3 (0.060) | 3/242 | NT | 6.2% | intergenic (‑85/+83) | csrA/lysC | carbon storage regulator/aspartokinase |
? | NC_002947 | 5080257 = | 40 (0.850) | intergenic (‑122/+46) | csrA/lysC | carbon storage regulator/aspartokinase |
GCGCACCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAACCTTGATC > NC_002947/5080110‑5080405 | gcgcACCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCa < 7:265124/149‑1 (MQ=255) gcACCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGa < 7:165349/149‑1 (MQ=255) gccgtacgcgcgctgcataccgcgttcgatctggatgctcctgcccgacagggcgagtaaggcgctgcctggaagggcgcggcttgccgcgcccttcgcgtttctgCTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGaaa > 8:155203‑M1/107‑149 (MQ=255) aCCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCatcac > 3:265746/1‑145 (MQ=255) acgaGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAAcgc > 2:89740/1‑148 (MQ=255) gaGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGTCGAGCAGAAACGCGaa < 2:295519/149‑1 (MQ=255) gAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGgcgc < 1:271393/149‑1 (MQ=255) aTCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGCCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGcgcg < 7:20783/148‑1 (MQ=255) cTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCgc‑gc < 3:86835/149‑1 (MQ=255) cTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTAGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCgc‑gc > 5:202676/1‑149 (MQ=255) tctcCTTACGCAAATCATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACATGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCTTGCCGC‑Gcc < 6:54689/147‑1 (MQ=255) ttACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAg > 4:131542/1‑149 (MQ=255) aCGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAgg > 1:173555/1‑148 (MQ=255) aCATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGcc < 8:158887/148‑1 (MQ=255) aCATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGcc > 7:158887/1‑148 (MQ=255) cATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCt > 7:289764/1‑148 (MQ=255) ttCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTTGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTAc < 3:289888/149‑1 (MQ=255) aGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTc < 1:89740/148‑1 (MQ=255) ggggTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGc < 8:122537/149‑1 (MQ=255) gggTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTAGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGcc < 6:202676/149‑1 (MQ=255) ggTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGccc > 1:52553/1‑149 (MQ=255) aGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCgg > 4:115090/1‑149 (MQ=255) tCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGccc > 7:298379/1‑141 (MQ=255) tCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGccc < 8:298379/141‑1 (MQ=255) tCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGc < 3:131542/149‑1 (MQ=255) cTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGcgcg < 8:196117/103‑1 (MQ=255) cTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGcgcg > 7:196117/1‑103 (MQ=255) ttGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAg > 7:278237/1‑149 (MQ=255) atatCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCggg < 8:228508/142‑1 (MQ=255) atatCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCggg > 7:228508/1‑142 (MQ=255) gggCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATc > 3:285777/1‑147 (MQ=255) ggCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCCTc > 6:22209/1‑146 (MQ=255) cgGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAAcgcg > 2:290490/1‑148 (MQ=255) cgGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAAcgcg < 1:290490/148‑1 (MQ=255) gacgacCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAg > 7:154281/1‑126 (MQ=255) gacgacCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAg < 8:154281/126‑1 (MQ=255) gacgacCATGGCCCCGGTTACTCGCCCCACCAGGCAGGACTGGACCTGCGCGGCGAGCAGAAACGCGAAGCGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGc < 8:274910/149‑1 (MQ=255) gacCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAgc > 6:114640/1‑149 (MQ=255) gacCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAgc > 7:56113/1‑149 (MQ=255) tttctgctcgccgcgcaggtcctgtcctgccttgtgcggcgagCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGc > 8:155203‑M2/44‑149 (MQ=255) ttACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAg < 6:262380/149‑1 (MQ=255) TCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTc < 7:158193‑M1/148‑1 (MQ=255) TCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTc < 4:146794‑M1/148‑1 (MQ=255) GCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTcc > 2:173555‑M1/1‑147 (MQ=255) CCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAgg > 8:289764‑M1/1‑149 (MQ=255) acaAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTAc > 1:88294/1‑149 (MQ=255) gtcctgtcctgccttgtgcggcgagCAGAAACGCGAAGAGCGCGGCAAGCCGC‑GCCCTTCCa > 5:48287‑M2/26‑62 (MQ=255) gtcctgtcctgccttgtgcggcgagCAGAAACGCGAAGAGCGCGGCAAGCCGC‑GCCCTTCCa < 6:48287‑M2/37‑1 (MQ=255) gCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTctct > 6:37757/1‑149 (MQ=255) aggacaggacCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTc < 2:165223/149‑1 (MQ=255) gacCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGcacc > 4:226170/1‑149 (MQ=255) ccTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGcaccac < 5:114640/149‑1 (MQ=255) cTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCaccacc < 8:56113/149‑1 (MQ=255) gcggcgagCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGc > 3:201634‑M2/9‑139 (MQ=255) gcggcgagCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGc < 4:201634‑M2/131‑1 (MQ=255) cggcgagCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAAc < 2:88294‑M2/142‑1 (MQ=255) agCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAACCTTGa < 8:158193‑M2/147‑1 (MQ=255) cAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAACCTTGAtc > 2:44151/1‑149 (MQ=255) | GCGCACCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGC‑GCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCACCGAAACCTTGATC > NC_002947/5080110‑5080405 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |