New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5094818	61 (1.210)	3 (0.060)	3/246	NT	5.1%	coding (388/699 nt)	hisM	histidine/lysine/arginine/ornithine ABC transporter permease
	?	NC_002947	= 5094848	54 (1.120)					coding (358/699 nt)	hisM	histidine/lysine/arginine/ornithine ABC transporter permease

GCAGCATCATGATCACTTCATTGCTGTACTGCGGCAGTGCCCGACGCAGTGCCGAAGGCAGCAGGATGCGGCGGTACATTTTCATGCGCGACATTCCCATGGCCTTGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5094707‑5094818 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagcCTCAAGGCGACGCCGCATGGCGAGATCGAAGCTGCCAAGGCCATGGGAATGTCGCGCATGAAAATGTACCGCCGCATCCTGCTGCCTTCGGCACTGCGTCGGGCACTGCCGCAGTACAGCAATGAAGTGATCATGATGCTGCA  <  NC_002947/5094848‑5094706                                                                                                                                                                                                                                                                 GCAGCATCATGATCACTTCATTGCTGTACTGCGGCAGTGCCCGACGCAGTGCCGAAGGCAGCAGGATGCGGCGGTACATTTTCATGCGCGACATTCCCATGGCCTTGGCAGCCTCAAGGCGACGCCGCATGGCGAGATCGAAGCTGCCA                                                                                                            <  7:69655/149‑1                                        CCCGACGCAGTGCCGAAGGCAGCAGGATGCGGCGGTACATTTTCATGCGCGACATTCCCATGGCCTTGGCAGCCTCAAGGCGACGCCGCATGGCGAGATCGAAGCTGCC                                                                                                             <  3:77471/109‑1                                        CCCGACGCAGTGCCGAAGGCAGCAGGATGCGGCGGTACATTTTCATGCGCGACATTCCCATGGCCTTGGCAGCCTCAAGGCGACGCCGCATGGCGAGATCGAAGCTGCC                                                                                                             >  4:77471/1‑109                                                                                                           GGCAGCCTCAAGGCGACGCCGCATGGCGAGATCGAAGCTGCCAAGGCCATGGGAATGTCGCGCATGAAAATGTACCGCCGCATCCTGCTGCCTTCGGCACTGCGTCGGGCACTGCCGCAGTACAGCAATGAAGTGATCATGATGCTGCA  <  6:156297/149‑1                                                                                                            GCAGCCTCAAGGCGACGCCGCATGGCGAGATCGAAGCTGCCAAGGCCATGGGAATGTCGCGCATGAAAATGTACCGCCGCATC                                                                   <  7:120837/83‑1                                                                                                            GCAGCCTCAAGGCGACGCCGCATGGCGAGATCGAAGCTGCCAAGGCCATGGGAATGTCGCGCATGAAAATGTACCGCCGCATC                                                                   >  8:120837/1‑83                                                                                                                CCTCAAGGCGACGCCGCATGGCGAGATCGAAGCTGCCAAGGCCATGGGAATGTCGCGCATGAAAATGTACCGCCGCATCCTGCTGCCTTCGGCACTGCGTCGGGCACTGCCG                                  >  1:119572/1‑112                                                                                                                CCTCAAGGCGACGCCGCATGGCGAGATCGAAGCTGCCAAGGCCATGGGAATGTCGCGCATGAAAATGTACCGCCGCATCCTGCTGCCTTCGGCACTGCGTCGGGCACTGCCG                                  <  2:119572/112‑1                                                                                                                                                                                                                                                                 GCAGCATCATGATCACTTCATTGCTGTACTGCGGCAGTGCCCGACGCAGTGCCGAAGGCAGCAGGATGCGGCGGTACATTTTCATGCGCGACATTCCCATGGCCTTGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5094707‑5094818 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagcCTCAAGGCGACGCCGCATGGCGAGATCGAAGCTGCCAAGGCCATGGGAATGTCGCGCATGAAAATGTACCGCCGCATCCTGCTGCCTTCGGCACTGCGTCGGGCACTGCCGCAGTACAGCAATGAAGTGATCATGATGCTGCA  <  NC_002947/5094848‑5094706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.