| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5101273 | 49 (0.970) | 3 (0.060) | 3/248 | NT | 6.1% | coding (354/1560 nt) | phhR | sigma‑54 dependent transcriptional regulator |
| ? | NC_002947 | = 5101301 | 45 (0.930) | coding (326/1560 nt) | phhR | sigma‑54 dependent transcriptional regulator | |||||
ACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5101159‑5101273‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaccGTGCAGCCGCGCAGTTGCTTGGCGTGCGGGTTGATGAGGTGCCGGGCATGCCGCTGGCGCGCTACGTAGAAGACTTCGATCTTCCGGAGTTGGTGCGGGCCAACAAGTCGCGCATCAACGGCTTGCGCATCAAAGTCAAAGGTGATGT < NC_002947/5101301‑5101154 ACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGGCAGCGGCATGCCCGGCACCTCATCAACCGTGCAGCCGGGCAGTTGCTTGGCGTGCGGGTTGA < 5:114573/149‑1 CGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCGTGCAGCCGCGCAGTTGCTTGGCGTGCGGGTTGATGA < 5:111416/136‑1 CGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACCGTGCAGCCGCGCAGTTGCTTGGCGTGCGGGTTGATGA > 6:111416/1‑136 AACCGTGCAGCCGCGCAGTTGCTTGGCGTGCGGGTTGATGAGGTGCCGGGCATGCCGCTGGCGCGCTACGTAGAAGACTTCGATCTTCCGGAGTTGGTGCGGGCCAACAAGTCGCGCATCAACGGCTTGCGCATCAAAGTCAAAGGTGA > 1:213716/1‑149 AACCGTGCAGCCGCGCAGTTGCTTGGCGTGCGGGTTGATGAGGTGCCGGGCATGCCGCTGGCGCGCTACGTAGAAGACTTCGATCTTCCGGAGTTGGTGCGGGCCAACAAGTCGCGCATCAACGGCTTGCGCATCAAAGTCAAAGGTGA > 1:319757/1‑149 AACCGTGCAGCCGCGCAGTTGCTTGGCGTGCGGGTTGATGAGGTGCCGGGCATGCCGCTGGCGCGCTACGTAGAAGACTTCGATCTTCCGGAGTTGGTGCGGGCCAACAAGTCGCGCATCAACGGCTTGCGCATCAAAGTCAAAGGTGA < 6:91866/149‑1 CGTGCAGCCGCGCAGTTGCTTGGCGTGCGGGTTGATGAGGTGCCGGGCATGCCGCTGGCGCGCTACGTAGAAGACTTCGATCTTCCGGAGTTGGTGCGGGCCAACAAGTCGCGCATCAACGGCTTGCGCATCAAAGTCAAAGGTGATGT > 2:132771/1‑149 ACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCACCTCATCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5101159‑5101273‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaccGTGCAGCCGCGCAGTTGCTTGGCGTGCGGGTTGATGAGGTGCCGGGCATGCCGCTGGCGCGCTACGTAGAAGACTTCGATCTTCCGGAGTTGGTGCGGGCCAACAAGTCGCGCATCAACGGCTTGCGCATCAAAGTCAAAGGTGATGT < NC_002947/5101301‑5101154 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |