New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5101273	49 (0.970)	3 (0.060)	3/248	NT	6.1%	coding (354/1560 nt)	phhR	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 5101301	45 (0.930)					coding (326/1560 nt)	phhR	sigma‑54 dependent transcriptional regulator

TGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTCAGCTCCATGTGCCGGCGTTCGCTGGGCATCAGGCCCACACGCTTAA  >  NC_002947/5101135‑5101421                                                                                                                                             |                                                                                                                                                     tGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGcc                                                                                                                                              >  3:257660/1‑147 (MQ=255)    gATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCa                                                                                                                                         <  4:200997/149‑1 (MQ=255)     atatCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCaa                                                                                                                                        >  1:132771/1‑149 (MQ=255)     atatCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCaa                                                                                                                                        <  6:205276/149‑1 (MQ=255)       atCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACt                                                                                                                                      >  8:119818/1‑149 (MQ=255)        tCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTg                                                                                                                                     <  7:41078/149‑1 (MQ=255)               gAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCt                                                                                                                              <  6:87398/149‑1 (MQ=255)                    acaTCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACg                                                                                                                         >  2:132771‑M2/1‑148 (MQ=255)                       tCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACggtt                                                                                                                      >  1:213716‑M2/1‑145 (MQ=255)                       tCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACggtt                                                                                                                      >  1:319757‑M2/1‑145 (MQ=255)                       tCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACggtt                                                                                                                      <  6:91866‑M2/149‑5 (MQ=255)                         aCCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGGCAGCGGCATGCCCGGCA‑‑CCTCATCAACCgtgcagccgggcagttgcttggcgtgcgggttga                                                                                                                    <  5:114573‑M1/149‑35 (MQ=255)                                actttgaTGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAAc                                                                                                             >  7:208385/1‑149 (MQ=255)                                  tttgaTGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGGCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGa                                                                                                           >  1:102251/1‑149 (MQ=255)                                         cgcAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCgtgcagccgcgcagttgcttggcgtgcgggttgatga                                                                                                                 <  5:111416‑M1/136‑38 (MQ=255)                                         cgcAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCgtgcagccgcgcagttgcttggcgtgcgggttgatga                                                                                                                 >  6:111416‑M1/1‑99 (MQ=255)                                          gcAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACg                                                                                                                                                <  2:307245/104‑1 (MQ=255)                                          gcAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACg                                                                                                                                                >  1:307245/1‑104 (MQ=255)                                           cAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTgccgc                                                                                                  <  7:119818/149‑1 (MQ=255)                                            aaGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTgccgcc                                                                                                 <  4:257660/149‑1 (MQ=255)                                               ccGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCAt                                                                                              >  5:301047/1‑149 (MQ=255)                                                cGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATg                                                                                             <  5:91866/149‑1 (MQ=255)                                                 gTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGt                                                                                            >  5:254966/1‑149 (MQ=255)                                                         gcgACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGAc                                                                                    <  8:208385/149‑1 (MQ=255)                                                           gACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAg                                                                                  >  3:260053/1‑149 (MQ=255)                                                                gttgGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCAcc                                                                              <  2:49150/148‑1 (MQ=255)                                                                 ttgGCCCGCACCAACTACGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCTCCCATGtcgat                                                                                        <  6:202177/137‑1 (MQ=255)                                                                 ttgGCCCGCACCAACTACGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAAAGATGCTGCCGCCCATGtcgat                                                                                        >  5:202177/1‑137 (MQ=255)                                                                     cccGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCAATGCACATAAACCCGAACGCCAAGCAACTGCGCGGATGCACGTTTGGCCGCAACGATGATGCCGCCCATGTCCATCGACAGCACCggg                                                                           >  1:92977/1‑148 (MQ=255)                                                                     cccGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAg                                                                        >  1:127422/1‑149 (MQ=255)                                                                     cccGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAg                                                                        >  4:112439/1‑149 (MQ=255)                                                                         cACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTc                                                                      >  4:50144/1‑147 (MQ=255)                                                                                  cGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGGAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCa                                                           >  1:262522/1‑149 (MQ=255)                                                                                  cGGAAGATCGAAGTCCTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGcccc                                                             <  4:260053/147‑1 (MQ=255)                                                                                   ggAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAg                                                          <  6:301047/149‑1 (MQ=255)                                                                                       gATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATCACCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGcgca                                                      >  5:184071/1‑146 (MQ=255)                                                                                             aGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTc                                                <  3:112439/149‑1 (MQ=255)                                                                                                 ttctACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTgccgc                                                                                                  <  4:37977/95‑1 (MQ=255)                                                                                                 ttctACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTgccgc                                                                                                  >  3:37977/1‑95 (MQ=255)                                                                                                 ttctACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGtcgat                                                                                        >  3:219859/1‑105 (MQ=255)                                                                                                 ttctACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGtcgat                                                                                        <  4:219859/105‑1 (MQ=255)                                                                                                 ttctACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGtcga                                                                                         >  8:26822/1‑104 (MQ=255)                                                                                                 ttctACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGtcga                                                                                         <  7:26822/104‑1 (MQ=255)                                                                                                 ttctACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTCAGCt                                            >  5:295357/1‑149 (MQ=255)                                                                                                    tACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCAGCCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTCAGCTCCa                                         >  1:228871/1‑149 (MQ=255)                                                                                                      cGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTCAGCTCCAt                                        <  2:92977/148‑1 (MQ=255)                                                                                                       gTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAg                                                          >  6:42853/1‑129 (MQ=255)                                                                                                             cgcCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTCAGCTCCATGTGCCg                                  >  4:222061/1‑147 (MQ=255)                                                                                                             cgcCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTCAGCTCCATGTGCCg                                  <  3:222061/147‑1 (MQ=255)                                                                                                               ccAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGACCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTGAGCTCCTTGAGCCGGCGt                              >  5:47009/1‑149 (MQ=255)                                                                                                                 aGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTCAGCTCCATGTGCCGGCGTTc                            >  5:46281/1‑149 (MQ=255)                                                                                                                 aGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTCAGCTCCATGTGCCGGCGTTc                            <  3:50144/149‑1 (MQ=255)                                                                                                                      cATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTCAGCTCCATGTGCCGGCGTTCGCTgg                       <  2:262522/149‑1 (MQ=255)                                                                                                                               cA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTCAGCTCCATGTGCCGGCGTTCGCTGGGCATCAGGc              >  5:282480/1‑149 (MQ=255)                                                                                                                                     tcatcaACCCGCACGCCAAGCAACTGCGCGGCTGCACggttgatgaggtgccgggcatgccgctggcgcgctacgtagaagacttcgatcttccggagttggtgcgggccaacaagtcgcgcatcaacggcttgcg                       >  6:111416‑M2/1‑37 (MQ=255)                                                                                                                                     tcatcaACCCGCACGCCAAGCAACTGCGCGGCTGCACggttgatgaggtgccgggcatgccgctggcgcgctacgtagaagacttcgatcttccggagttggtgcgggccaacaagtcgcgcatcaacggcttgcg                       <  5:111416‑M2/136‑100 (MQ=255)                                                                                                                                       atcaACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTCAGCTCCATGTGCCGGCGTTCGCTGGGCATCAGGCCcaca         <  6:282480/148‑1 (MQ=255)                                                                                                                                       atcaACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTCAGCTCCATGTGCCGGCGTTCGCTGGGCATCAGGCCcac          <  6:254966/147‑1 (MQ=255)                                                                                                                                        tcaACCCGCACGCCAAGCAACTGCCCGGCTGCACggttgatgaggtgccgggcatgccgctgccgcgctacgtagaagacttcgatcttccggagttggtgcgggccaacaagtcgcgcatcaacggcttgcgcatcaaagtcaaaggt       <  5:114573‑M2/149‑116 (MQ=255)                                                                                                                                          aaCCgtgcagccgcgcagttgcttggcgtgcgggttgatgaggtgccgggcatgccgctggcgcgctacgtagaagacttcgatcttccggagttggtgcgggccaacaagtcgcgcatcaacggcttgcgcatcaaagtcaaaggtga     <  6:91866‑M1/149‑146 (MQ=255)                                                                                                                                          aaCCgtgcagccgcgcagttgcttggcgtgcgggttgatgaggtgccgggcatgccgctggcgcgctacgtagaagacttcgatcttccggagttggtgcgggccaacaagtcgcgcatcaacggcttgcgcatcaaagtcaaaggtga     >  1:319757‑M1/1‑4 (MQ=255)                                                                                                                                          aaCCgtgcagccgcgcagttgcttggcgtgcgggttgatgaggtgccgggcatgccgctggcgcgctacgtagaagacttcgatcttccggagttggtgcgggccaacaagtcgcgcatcaacggcttgcgcatcaaagtcaaaggtga     >  1:213716‑M1/1‑4 (MQ=255)                                                                                                                                            cccGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTCAGCTCCATGTGCCGGCGTTCGCTGGGCATCAGGCCCACACGCTTa   <  6:295357/149‑1 (MQ=255)                                                                                                                                             cgtgcagccgcgcagttgcttggcgtgcgggttgatgaggtgccgggcatgccgctggcgcgctacgtagaagacttcgatcttccggagttggtgcgggccaacaagtcgcgcatcaacggcttgcgcatcaaagtcaaaggtgatgt  >  2:132771‑M1/1‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                     TGCGATATCGGCCAGAAACACATCACCTTTGACTTTGATGCGCAAGCCGTTGATGCGCGACTTGTTGGCCCGCACCAACTCCGGAAGATCGAAGTCTTCTACGTAGCGCGCCAGCGGCATGCCCGGCA‑‑CCTCATCAACCCGCACGCCAAGCAACTGCGCGGCTGCACGGTTGGCCGCAACGATGCTGCCGCCCATGTCGATCGACAGCACCGGGAAGTCCAGCGCCCCCAGCAACGCATTCAGCTCCATGTGCCGGCGTTCGCTGGGCATCAGGCCCACACGCTTAA  >  NC_002947/5101135‑5101421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.