New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5288394 =	20 (0.400)	5 (0.130)	4/198	NT	22.5%	intergenic (‑75/+109)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	5288488 =	19 (0.490)					intergenic (‑169/+15)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B

CGGATGTGCCGGCGGCGTTGGCAGCTTATGAGGCCCATCTGGACAAGGTGTTTGGCAAGGCACAGTAATTTTATGTCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5288570‑5288394 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTGGTTGGCC  >  NC_002947/5288488‑5288635                                                                                                                                                                                                                                                                                                                                          CGGATGTGCCGGCGGCGTTGGCAGCTTATGAGGCCCATCTGGACAAGGTGTTTGGCAAGGCACAGTAATTTTATGTCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTG                                                                                                                                                                                     <  8:173958/149‑1                                                                                            CGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGG                                                                                                                                                                                  >  6:38745/1‑61                                                                                            CGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGG                                                                                                                                                                                  <  5:38745/61‑1                                                                                                        CGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGG                                                                              >  6:168150/1‑149                                                                                                        CGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCC                                                                                                              <  5:123342/117‑1                                                                                                        CGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCC                                                                                                              >  6:123342/1‑117                                                                                                         GCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGG                                                                              >  5:75359/1‑148                                                                                                                      TTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CT                                                             <  5:168150/149‑1                                                                                                                                                    TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGG                                 >  2:63456/1‑147                                                                                                                                                      TGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCA                               <  1:63456/147‑1                                                                                                                                                        GGAGCGGGCAAGCCCGCGAAGAGGTCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCC                           >  2:97003/1‑149                                                                                                                                                        GGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCC                           >  4:53562/1‑149                                                                                                                                                        GGACCGGGCCAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTCGCCCAACCCCTTGTCCAGATGCGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGC                            <  8:57032/148‑1                                                                                                                                                         GAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGG                                                                     >  5:292814/1‑109                                                                                                                                                         GAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGG                                                                     <  6:292814/109‑1                                                                                                                                                             GGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGAGAGTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGG                         >  1:107980/1‑149                                                                                                                                                              GGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCAT                     >  6:292399/1‑149                                                                                                                                                              GGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGACGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCAAAGCCAGGAAGGTCGGCAGGCCGGTCAT                     >  2:276920/1‑149                                                                                                                                                               GCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATG                    >  4:242379/1‑149                                                                                                                                                                   GCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCA                <  5:190542/149‑1                                                                                                                                                                              GGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTGGTT      <  3:53562/148‑1                                                                                                                                                                              GGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCA                                           >  5:48203/1‑111                                                                                                                                                                              GGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCA                                           <  6:48203/111‑1                                                                                                                                                                               GCCGGTACAGACATAAAATTACTGTGCCTTGCCAAAGACCTTGTCCAGTTGTGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTCCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCGCAGGAACTGGTTGG    <  7:299721/149‑1                                                                                                                                                                                 CGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTGGTTGGCC  <  5:292399/149‑1                                                                                                                                                                                                                                                                                                                                          CGGATGTGCCGGCGGCGTTGGCAGCTTATGAGGCCCATCTGGACAAGGTGTTTGGCAAGGCACAGTAATTTTATGTCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5288570‑5288394 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTGGTTGGCC  >  NC_002947/5288488‑5288635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.