| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5288394 = | 20 (0.400) | 5 (0.130) | 4/198 | NT | 22.5% | intergenic (‑75/+109) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B |
| ? | NC_002947 | 5288488 = | 19 (0.490) | intergenic (‑169/+15) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B | |||||
AAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTGGTTGGCC > NC_002947/5288345‑5288635 | aaGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTa > 5:150622/1‑147 (MQ=255) aTTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCGTTGCCC‑CGCCCCCAAGTAAAGGAAA‑ATACATTAAAACAGCGGAATTACAGTGGGGGCGGGGCAGCCCCCGAACAGGCCCGGACaaaa > 2:167762/1‑145 (MQ=255) aTTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTTCCCGCTACCACAAGTACTGCAAA‑GTCCTTGAAACCAGCGTAATACCTGTCGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGAc > 5:74151/1‑148 (MQ=255) caTAACCGCTTGTCGCGGCAAAGTCCCGCGGCGCCTGTAGGGGCCTCTTCGCGGGC‑TGGCCCGCTCCCAAAATTACTCCAAA‑GTCGTTCAAACCTCCTTAATCCCTGGGGGAGCGGGAAAGCCCGCGAAGAGGCCGGTACAGACATaaa < 8:180157/148‑1 (MQ=255) tCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGcc < 5:149652/148‑1 (MQ=255) gAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTg < 6:150622/149‑1 (MQ=255) tcatggggcgCCTTTTTGGGCCTCTGCGCGGGG‑TTGCCCGC‑ACCAAAATGATTTCAAATGTCTTTTAACCCTGCTTATTACGTTGGGTTGGGGGAATGCCCGGGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACAcc < 2:284937/143‑1 (MQ=255) ggcgCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACATGTACTGCAAA‑GTCCTTGAAACCTGCTTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTcc < 5:114969/149‑1 (MQ=255) ggcgCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAATTACTCAAAA‑GTCCTTCAAACCTCCTAAAAACCTGTGGGCGGGGGAAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTcc < 1:167762/149‑1 (MQ=255) gcCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGGAATACCTGTGGGAGCGGGCAAGCCCGCGCAGAGGCCGGTAAAGCCATAAAATTACTGTGCCATGCCAACCACCTTGTCCCGa > 7:57032/1‑149 (MQ=37) cgctcccacaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTcc > 6:123342‑M2/75‑117 (MQ=255) cgctcccacaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTcc < 5:123342‑M2/43‑1 (MQ=255) cgctcccacaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCgg > 6:168150‑M2/75‑149 (MQ=255) gctcccacaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCgg > 5:75359‑M2/74‑148 (MQ=255) CAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCg < 8:173958‑M1/149‑1 (MQ=255) cTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGgcg‑‑‑c < 7:173958/148‑1 (MQ=255) cTGAAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGAAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑Ct < 3:110907/149‑1 (MQ=255) ttacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑Ct < 5:168150‑M2/89‑1 (MQ=255) tGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑Ctt > 6:106260/1‑149 (MQ=255) gCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCtt < 8:56323/97‑1 (MQ=255) gCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCtt > 7:56323/1‑97 (MQ=255) cAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAg > 3:165516/1‑116 (MQ=255) cAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAg < 4:165516/116‑1 (MQ=255) cTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGc > 4:101030/1‑147 (MQ=255) cTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAAAACATTGTCAAGATGGGCCACATAAGCTGCCAACGCAGCCGGAAAATCCGGCCG‑‑‑CTCCATCACATCCACAGc > 8:299721/1‑147 (MQ=38) tAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAg > 6:190542/1‑149 (MQ=255) ccTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCgg > 5:313473/1‑149 (MQ=255) cTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGc < 5:106260/149‑1 (MQ=255) tgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCgg > 2:63456‑M2/31‑147 (MQ=255) tgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCa < 1:63456‑M2/119‑1 (MQ=255) ggagcgggcaagcccgcgaagaggtcGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGcc > 2:97003‑M2/27‑149 (MQ=255) ggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGcc > 4:53562‑M2/27‑149 (MQ=255) ggaccgggccagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTCGCCCAACCCCTTGTCCAGATGCGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGc < 8:57032‑M2/122‑1 (MQ=255) gagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCgg < 6:292814‑M2/84‑1 (MQ=255) gagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCgg > 5:292814‑M2/26‑109 (MQ=255) gggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGAGAGTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCgg > 1:107980‑M2/22‑149 (MQ=255) ggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCAt > 6:292399‑M2/21‑149 (MQ=255) ggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGACGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCAAAGCCAGGAAGGTCGGCAGGCCGGTCAt > 2:276920‑M2/21‑149 (MQ=255) gcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATg > 4:242379‑M2/20‑149 (MQ=255) gcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCa < 5:190542‑M2/134‑1 (MQ=255) ggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCa < 6:48203‑M2/107‑1 (MQ=255) ggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCa > 5:48203‑M2/5‑111 (MQ=255) ggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTGGtt < 3:53562‑M2/144‑1 (MQ=255) gccGGTACAGACATAAAATTACTGTGCCTTGCCAAAGACCTTGTCCAGTTGTGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTCCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCGCAGGAACTGGTTgg < 7:299721‑M2/146‑1 (MQ=255) cGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTGGTTGGcc < 5:292399‑M2/148‑1 (MQ=255) | AAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCG‑‑‑CTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTGGTTGGCC > NC_002947/5288345‑5288635 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |