New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5288423	20 (0.400)	4 (0.100)	3/198	NT	18.9%	intergenic (‑104/+80)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	= 5288457	19 (0.490)					intergenic (‑138/+46)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B

GTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5288312‑5288423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggcttgcccgctcccacaGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGATGTGAAAACCC  <  NC_002947/5288457‑5288310                                                                                                                                                                                                                                                                      GTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGT                                                                                                                 >  3:99741/1‑149    TTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGG                                                                                                               <  4:99741/148‑1                                  AAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGG                                                                                                               >  6:71321/1‑118                                  AAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGG                                                                                                               <  5:71321/118‑1                                                                                           CGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAAC                         <  3:254605/147‑1                                                                                            GCGGGCTGCCCCGCCCCCACTGGTATTCCGCAGGTTTCAAGCACTTGCCAGTACTTGTGGTCGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCA                       <  3:216341/148‑1                                                                                             CGGGCTTGCCGGGGCCCACAGTAATTCCGCTGGTTTCATGGACTTTGCAGTAGTTGTGGGAGGGGGAATGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACA                     <  1:284937/149‑1                                                                                                  TTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCC                >  5:254363/1‑149                                                                                                    GCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCT               >  4:258259/1‑148                                                                                                     CCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGA             <  6:149652/149‑1                                                                                                     CCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTG              <  6:254363/148‑1                                                                                                      CCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGAT            >  1:109315/1‑149                                                                                                      CCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCACCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAAC                         <  6:321428/136‑1                                                                                                      CCGCTCCCACAGGTATAACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCACCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAAC                         >  5:321428/1‑136                                                                                                       CGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGATG           <  3:258259/149‑1                                                                                                              ACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGATGTGAAAAC    >  1:294385/1‑149                                                                                                                AGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGATGTGAAAACCC  <  2:294385/149‑1                                                                                                                                                                                                                                                                      GTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5288312‑5288423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggcttgcccgctcccacaGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGATGTGAAAACCC  <  NC_002947/5288457‑5288310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.