| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5288423 | 20 (0.400) | 4 (0.100) | 3/198 | NT | 18.9% | intergenic (‑104/+80) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B |
| ? | NC_002947 | = 5288457 | 19 (0.490) | intergenic (‑138/+46) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B | |||||
TGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCG > NC_002947/5288277‑5288570 | ccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCcaca > 2:63456‑M1/118‑147 (MQ=255) ccTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCtt < 5:125321/149‑1 (MQ=255) ccTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCtt < 1:299232/149‑1 (MQ=255) tGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCtt < 5:211397/147‑1 (MQ=255) tGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCtt > 6:211397/1‑147 (MQ=255) gAGTTCTTCGGCTCGGGTTTTCTCATCAGCGCCTTTGGTTGGTCTGTGCAAGGATTCGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGa < 4:186651/147‑1 (MQ=39) tcGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCCCTCCCACAAGTACTGCCAA‑GTCCGTGAAACCTGCg > 4:110907/1‑148 (MQ=255) cGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGAGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGc < 5:281583/146‑1 (MQ=255) agcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTaa < 5:168150‑M1/60‑1 (MQ=255) tCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATAc < 4:116056/149‑1 (MQ=255) gggTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCt < 2:294385‑M2/149‑2 (MQ=255) gTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgt > 3:99741‑M1/1‑112 (MQ=255) gTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCtgt > 1:294385‑M2/1‑146 (MQ=255) ttCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgg < 4:99741‑M1/148‑40 (MQ=255) tCACATCAGGGCATGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGt < 3:209466/136‑1 (MQ=255) ccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGc > 5:75359‑M1/76‑148 (MQ=255) ccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCg > 6:168150‑M1/76‑149 (MQ=255) caTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCtgtgggagcg < 3:258259‑M2/149‑11 (MQ=255) aTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCtgtgggagcgg > 1:109315‑M2/1‑138 (MQ=255) tCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCtgtgggagcggg < 6:149652‑M2/149‑13 (MQ=255) cAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCtgtgggagcggg < 6:254363‑M2/148‑13 (MQ=255) aGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCtgtgggagcgggc > 4:258259‑M2/1‑135 (MQ=255) gggCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaa > 5:254363‑M2/1‑134 (MQ=255) tgtgGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑ATTCCCCCTCCCACAACTACTGCAAA‑GTCCATGAAACCAGCGGAATTACtgtgggccccggcaagcccg < 1:284937‑M2/149‑21 (MQ=255) tggttggtCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCGACCACAAGTACTGGCAA‑GTGCTTGAAACCTGCGGAATACCagtgggggcggggcagcccgc < 3:216341‑M2/148‑22 (MQ=255) gttggtCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGTGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTTATACCtgtgggagcgg > 5:321428‑M2/1‑125 (MQ=255) gttggtCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGTGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCtgtgggagcgg < 6:321428‑M2/136‑12 (MQ=255) gttggtCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcg < 3:254605‑M2/147‑23 (MQ=255) gtCTGTGCATGTATTATATACCCGTTTGGCGTGGCCAAGTCCTGGGGCGCCGTTATGGGCCTCTTCGCGGGC‑TGGCCCGCTCCCACATGTACTGCAAA‑GTCTTTGAACCCTGCTTAATCCCTGTGGGTGCGGGCAAGCCCGCGAAGAgg < 4:254605/149‑1 (MQ=255) aaGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgg < 5:71321‑M1/118‑40 (MQ=255) aaGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgg > 6:71321‑M1/1‑79 (MQ=255) aaGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTa > 5:150622/1‑147 (MQ=255) aTTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCGTTGCCC‑CGCCCCCAAGTAAAGGAAA‑ATACATTAAAACAGCGGAATTACAGTGGGGGCGGGGCAGCCCCCGAACAGGCCCGGACaaaa > 2:167762/1‑145 (MQ=255) aTTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTTCCCGCTACCACAAGTACTGCAAA‑GTCCTTGAAACCAGCGTAATACCTGTCGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGAc > 5:74151/1‑148 (MQ=255) ggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCg < 5:123342‑M1/74‑1 (MQ=255) ggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCg > 6:123342‑M1/44‑117 (MQ=255) caTAACCGCTTGTCGCGGCAAAGTCCCGCGGCGCCTGTAGGGGCCTCTTCGCGGGC‑TGGCCCGCTCCCAAAATTACTCCAAA‑GTCGTTCAAACCTCCTTAATCCCTGGGGGAGCGGGAAAGCCCGCGAAGAGGCCGGTACAGACATaaa < 8:180157/148‑1 (MQ=255) tCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGcc < 5:149652/148‑1 (MQ=255) gAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTg < 6:150622/149‑1 (MQ=255) tcatggggcgCCTTTTTGGGCCTCTGCGCGGGG‑TTGCCCGC‑ACCAAAATGATTTCAAATGTCTTTTAACCCTGCTTATTACGTTGGGTTGGGGGAATGCCCGGGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACAcc < 2:284937/143‑1 (MQ=255) ggcgCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACATGTACTGCAAA‑GTCCTTGAAACCTGCTTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTcc < 5:114969/149‑1 (MQ=255) ggcgCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAATTACTCAAAA‑GTCCTTCAAACCTCCTAAAAACCTGTGGGCGGGGGAAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTcc < 1:167762/149‑1 (MQ=255) gcCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGGAATACCTGTGGGAGCGGGCAAGCCCGCGCAGAGGCCGGTAAAGCCATAAAATTACTGTGCCATGCCAACCACCTTGTCCCGa > 7:57032/1‑149 (MQ=37) cgcgGGC‑TTGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaac < 3:254605‑M1/147‑126 (MQ=255) gcgGGC‑TGCCCCGCCCCCACTggtattccgcaggtttcaagcacttgccagtacttgtggtcgcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaacca < 3:216341‑M1/148‑128 (MQ=255) cgGGC‑TTGCCGGGGCCCACAgtaattccgctggtttcatggactttgcagtagttgtgggagggggaatgcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccaca < 1:284937‑M1/149‑130 (MQ=255) ttGCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccc > 5:254363‑M1/1‑15 (MQ=255) gCCCGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccct > 4:258259‑M1/1‑13 (MQ=255) cccGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctga < 6:149652‑M1/149‑138 (MQ=255) cccGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctg < 6:254363‑M1/148‑137 (MQ=255) ccGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctgat > 1:109315‑M1/1‑11 (MQ=255) ccGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcaccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaac < 6:321428‑M1/136‑126 (MQ=255) ccGCTCCCACAggtataacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcaccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaac > 5:321428‑M1/1‑11 (MQ=255) cGCTCCCACAggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctgatg < 3:258259‑M1/149‑140 (MQ=255) ccACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctgatgtgaa < 4:99741‑M2/148‑110 (MQ=255) ccACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatcctt > 6:71321‑M2/1‑39 (MQ=255) ccACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatcctt < 5:71321‑M2/118‑80 (MQ=255) CCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCcgcg > 6:38745‑M1/1‑61 (MQ=255) CCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCcgcg < 5:38745‑M1/61‑1 (MQ=255) acaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctgatgtgaaaac > 1:294385‑M1/1‑3 (MQ=255) acaAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctgatgtgaaaac > 3:99741‑M2/1‑37 (MQ=255) CAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCg < 8:173958‑M1/149‑1 (MQ=255) aggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctgatgtgaaaaccc < 2:294385‑M1/149‑149 (MQ=255) | TGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGC‑TTGCCCGCTCCCACAAGTACTGCAAA‑GTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCG > NC_002947/5288277‑5288570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |