New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5334452	49 (0.970)	3 (0.060)	3/242	NT	6.1%	coding (882/2976 nt)	PP_4695	two‑component system sensor histidine kinase
	?	NC_002947	= 5334475	47 (0.990)					coding (905/2976 nt)	PP_4695	two‑component system sensor histidine kinase

CTGCTGGTGTTCTTCGCCTCGGCCATCGTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5334303‑5334452 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgctgGCGCCCAGGCGCAGGCCGGCCCACAGCACCAGCGGCACGGCAAGGCTCATCAGCAGCAGGAACAGCGGCAGGCCCCAGCTGGCGCTGACCAGCGAGCGCGGGTTGAGGTTCTCGGTAAAGGCCATGTGGTACATGTGCGGCATGACGA  <  NC_002947/5334475‑5334328                                                                                                                                                                                                                                                                                                            CTGCTGGTGTTCTTCGCCTCGGCCATCGTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTG                                                                                                                                                         <  3:115870/147‑1  TGCTGGTGTTCTTCGCCTCGGCCATCGTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTG                                                                                                                                                      >  2:260621/1‑149                              CATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTG                                                                                                                                                            >  1:51950/1‑115                              CATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTG                                                                                                                                                            <  2:51950/115‑1                                   CGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGGCGCCCAGGCGCAGGCCGGCCCACAGCACCAGC                                                                                                                     <  1:162114/149‑1                                                                  CCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGGCGCCCAGGCGCAGGCCGGCCCACAGCACCAG                                                                                                                      <  8:197457/117‑1                                                                  CCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGGCGCCCAGGCGCAGGCCGGCCCACAGCACCAG                                                                                                                      >  7:197457/1‑117                                                                                                                                                GGTGCTGGCGCCCAGGCGCAGGCCGGCCCACAGCACCAGCGGCACGGCAAGGCTCATCAGCAGCAGGAACAGCGGCAGGCCCCAGCTGGCGCTGACCAGCGAGCGCGGGTTGAGGTTCTCGGTAAAGGCCGTGTGGTACATGTGCGGC         <  6:227389/148‑1                                                                                                                                                GGTGCTGGCGCCCAGGCGCAGGCCGGCCCACAGCACCAGCGGCACGGCAAGGCTCATCAGCAGCAGGAACAGCGGCAGGCCCCAGCTGGCGCTGACCAGCGAGCGCGGGTTGAGGTTCTCGGTAAAGGCCATGTGGT                    >  2:26651/1‑137                                                                                                                                                GGTGCTGGCGCCCAGGCGCAGGCCGGCCCACAGCACCAGCGGCACGGCAAGGCTCATCAGCAGCAGGAACAGCGGCAGGCCCCAGCTGGCGCTGACCAGCGAGCGCCGGTTGAGGTTCTCGGTAAAGGCCATGTGGT                    <  1:26651/137‑1                                                                                                                                                 GTGCTGGCGCCGAGGCGCAGGCCGGCCCACAGCACCAGCGGCACGGCAAGGCTCATCAGCAGCAGGAACAGCGGCAGGCCCCAGCTGGCGCTGACCAGCGAGCGCGGGTTGAGGTTCTCGGTAAAGGCCATGTGGTACATGTGCGGCA        <  7:58710/148‑1                                                                                                                                                   GCTGGCGCCCAGGCGCAGGCCGGCCCACAGCACCAGCGGCACGGCAAGGCTCATCAGCAGCAGGAACAGCGGCAGGCCCCAGCTGGCGCTGACCAGCGAGCGCGGGTTGAGGTTCTCGGTAAAGGCCATGTGGTACATGTGCGGCATGA     <  4:104787/149‑1                                                                                                                                                   GCTGGCGCCCAGGCGCAGGCCGGCCCACAGCACCAGCGGCACGGCAAGGCTCATCAGCAGCAGGAACAGCGGCAGGCCCCAGCTGGCGC                                                                 <  2:36587/89‑1                                                                                                                                                   GCTGGCGCCCAGGCGCAGGCCGGCCCACAGCACCAGCGGCACGGCAAGGCTCATCAGCAGCAGGAACAGCGGCAGGCCCCAGCTGGCGC                                                                 >  1:36587/1‑89                                                                                                                                                    CTGGCGCCCAGGCGCAGGCCGGCCCACAGCACCAGCGGCACGACAAGGCTCATCAGCAGCAGGAACAGCGGCAGGCCCCAGCTGGCGCTGACCAGCGAGCGCGGGTTGAGGTTCTCGGTAAAGGCCATGTGGTACATGTGCGGCATGAC    <  3:216148/149‑1                                                                                                                                                      GGCGCCCAGGCGCAGGCCGGCCCACAGCACCAGCGGCACGGCAAGGCTCATCAGCAGCAGGAACAGCGGCAGGCCCCAGCTGGCGCTGACCAGCGAGCGCGGGTTGAGGTTCTCGGTAAAGGCCATGTGGTACATGTGCGGCATGACGA  >  2:205897/1‑149                                                                                                                                                      GGCGCCCAGGCGCAGGCCGGCCCACAGCACCAGCGGCACGGCAAGGCTCATCAGCAGCAGGAACAGCGGCAGGCCCCAGCTGGCGCTGACCAGCGAGCGCGGGTTGAGGGTCTCGGTAAAGGCCATGTGGTACAGGTGCGGCATGACGA  >  5:321317/1‑149                                                                                                                                                                                                                                                                                                            CTGCTGGTGTTCTTCGCCTCGGCCATCGTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5334303‑5334452 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgctgGCGCCCAGGCGCAGGCCGGCCCACAGCACCAGCGGCACGGCAAGGCTCATCAGCAGCAGGAACAGCGGCAGGCCCCAGCTGGCGCTGACCAGCGAGCGCGGGTTGAGGTTCTCGGTAAAGGCCATGTGGTACATGTGCGGCATGACGA  <  NC_002947/5334475‑5334328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.