New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5334452	49 (0.970)	3 (0.060)	3/242	NT	6.1%	coding (882/2976 nt)	PP_4695	two‑component system sensor histidine kinase
	?	NC_002947	= 5334475	47 (0.990)					coding (905/2976 nt)	PP_4695	two‑component system sensor histidine kinase

TGCTGGTGTTCTTCGCCTCGGCCATCGTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGG  >  NC_002947/5334304‑5334600                                                                                                                                                     |                                                                                                                                                     tgctgGTGTTCTTCGCCTCGGCCATCGTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTG                                                                                                                                                      >  2:260621‑M1/1‑149 (MQ=255)   ctgGTGTTCTTCGCCTCGGCCATCGTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCtgtg                                                                                                                                                    >  4:248799/1‑149 (MQ=255)         ttcttcGCCTCGGCCATCGTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGggccgg                                                                                                                                              >  6:71788/1‑149 (MQ=255)           cttcGCCTCGGCCATCGTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGggccggc                                                                                                                                             <  5:325890/148‑1 (MQ=255)              cGCCTCGGCCATCGTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTg                                                                                                                                          <  2:20175/148‑1 (MQ=255)                   cGGCCATCGTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTg                                                                                                                                    >  7:242679/1‑149 (MQ=255)                    ggCCATCGTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCt                                                                                                                                     <  5:71788/147‑1 (MQ=255)                       cATCGTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGgcg                                                                                                                                >  4:40913/1‑149 (MQ=255)                         tCGTCATGCCGCACCTGTACCACATGGCCTTTACCGAGACCCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCc                                                                                                                              >  5:321317‑M2/1‑148 (MQ=255)                         tCGTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCc                                                                                                                              >  2:205897‑M2/1‑148 (MQ=255)                           gTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGTCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCcag                                                                                                                            <  3:216148‑M2/149‑4 (MQ=255)                            tCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCcagc                                                                                                                           <  4:104787‑M2/149‑5 (MQ=255)                               tGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTCGGCGCcagcac                                                                                                                         <  7:58710‑M2/148‑7 (MQ=255)                                gCCGCACATGTACCACACGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCcagcacc                                                                                                                        <  6:227389‑M2/148‑8 (MQ=255)                                  cGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGgcgcccaggcgcaggccggcccacagcaccagc                                                                                                                     <  1:162114‑M1/149‑34 (MQ=255)                                  cGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAAc                                                                                                                     <  3:104787/149‑1 (MQ=255)                                   gCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAAcc                                                                                                                    >  4:100323/1‑149 (MQ=255)                                       aTGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAAcccc                                                                                                                  >  7:191333/1‑147 (MQ=255)                                        tGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAg                                                                                                               <  3:40913/149‑1 (MQ=255)                                         gTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCtgt                                                                                                                                                     >  6:273411/1‑110 (MQ=255)                                         gTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCtgt                                                                                                                                                     <  5:273411/110‑1 (MQ=255)                                           aCCACATGGCCTTTACCGAGAACCTCAACCGGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCcagcacc                                                                                                                        <  1:26651‑M2/137‑8 (MQ=255)                                           aCCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCcagcacc                                                                                                                        >  2:26651‑M2/1‑130 (MQ=255)                                             cacaTGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACtt                                                                                                          <  6:67517/149‑1 (MQ=255)                                               caTGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCa                                                                                                        <  7:242135/149‑1 (MQ=255)                                                aTGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCAc                                                                                                       >  8:303828/1‑149 (MQ=255)                                                     cTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACcctgg                                                                                                  <  5:227389/149‑1 (MQ=255)                                                     cTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACcctgg                                                                                                  >  3:275755/1‑149 (MQ=255)                                                     cTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACcctgg                                                                                                  <  5:283181/149‑1 (MQ=255)                                                         aCCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACcctg                                                                                                   >  8:220410/1‑144 (MQ=255)                                                         aCCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACcctg                                                                                                   <  7:220410/144‑1 (MQ=255)                                                          ccGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACcctgggcctg                                                                                             >  6:89430/1‑149 (MQ=255)                                                           cGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACccttggcctgg                                                                                            <  6:144656/149‑1 (MQ=255)                                                           cGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACcctgggcctgg                                                                                            >  5:144656/1‑149 (MQ=255)                                                             agaACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGGACTTCACcctgggcctggg                                                                                           >  3:69041/1‑148 (MQ=255)                                                               aaCCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCAt                                                                                        <  3:248799/149‑1 (MQ=255)                                                                 ccTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGgcgcccaggcgcaggccggcccacagcaccag                                                                                                                      <  8:197457‑M1/117‑33 (MQ=255)                                                                 ccTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGgcgcccaggcgcaggccggcccacagcaccag                                                                                                                      >  7:197457‑M1/1‑85 (MQ=255)                                                                     caCCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATcgccgc                                                                                  <  8:223139/148‑1 (MQ=255)                                                                     aaCCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATcgccg                                                                                   <  4:275755/148‑1 (MQ=255)                                                                            gctcgctGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCaacaac                                                                           <  6:304530/149‑1 (MQ=255)                                                                             ctcgctGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAAcc                                                                          <  8:191333/149‑1 (MQ=255)                                                                                gctGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGTCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCa                                                                         <  4:216148/147‑1 (MQ=255)                                                                                gctGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCAcc                                                                                                      >  8:85081/1‑118 (MQ=255)                                                                                gctGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCAcc                                                                                                      <  7:85081/118‑1 (MQ=255)                                                                                gctGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAg                                                                        <  5:89430/148‑1 (MQ=255)                                                                                gctGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAg                                                                        <  1:260621/148‑1 (MQ=255)                                                                                    gTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACcctgg                                                                                                  >  2:25325/1‑118 (MQ=255)                                                                                    gTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACcctgg                                                                                                  >  2:30182/1‑118 (MQ=255)                                                                                    gTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCAtt                                                                   <  8:242679/149‑1 (MQ=255)                                                                                       aGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTgg                                                                 >  8:125570/1‑148 (MQ=255)                                                                                        gcgcCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCcagc                                                                                                                           <  2:36587‑M2/89‑5 (MQ=255)                                                                                        gcgcCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCcagc                                                                                                                           >  1:36587‑M2/1‑85 (MQ=255)                                                                                          gcCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCAct                                                             >  7:121904/1‑149 (MQ=255)                                                                                                    gCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTa                                                    >  5:307919/1‑148 (MQ=255)                                                                                                        gCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCAAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTg                                               <  8:121904/149‑1 (MQ=255)                                                                                                               ttCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCt                                        <  2:17064/149‑1 (MQ=255)                                                                                                                     ctgctgATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCgg                                   >  2:18097/1‑148 (MQ=255)                                                                                                                      tgctgATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCGGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGca                                 <  5:272688/149‑1 (MQ=255)                                                                                                                           atgaGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGcagccag                            >  4:312201/1‑149 (MQ=255)                                                                                                                               gCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGc                        >  7:163729/1‑149 (MQ=255)                                                                                                                                 cTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCt                      <  5:36531/149‑1 (MQ=255)                                                                                                                                       gtgccgCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGatcat                >  6:266392/1‑149 (MQ=255)                                                                                                                                         gccgCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCg              >  7:161680/1‑149 (MQ=255)                                                                                                                                            gCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCcagcaccagcggcacggcaaggctcatcagcagcaggaacagcggcaggccccagctggcgctgaccagcgagcgcgggttgaggttctcggtaaaggccatgtggtacatgtgcg           <  1:162114‑M2/149‑117 (MQ=255)                                                                                                                                             cTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCcagcaccagcggcacggcaaggctcatcagcagcaggaacagcggcaggccccagctggcgctgaccagcgagcgcgggttgagg                                          <  8:197457‑M2/117‑86 (MQ=255)                                                                                                                                             cTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCcagcaccagcggcacggcaaggctcatcagcagcaggaacagcggcaggccccagctggcgctgaccagcgagcgcgggttgagg                                          >  7:197457‑M2/1‑32 (MQ=255)                                                                                                                                             cTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCActgc                                                           <  4:56795/100‑1 (MQ=255)                                                                                                                                             cTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCActgc                                                           >  3:56795/1‑100 (MQ=255)                                                                                                                                               ggTGCTGgcgcccaggcgcaggccggcccacagcaccagcggcacggcaaggctcatcagcagcaggaacagcggcaggccccagctggcgctgaccagcgagcgcgggttgaggttctcggtaaaggccgtgtggtacatgtgcggc         <  6:227389‑M1/148‑142 (MQ=255)                                                                                                                                               ggTGCTGgcgcccaggcgcaggccggcccacagcaccagcggcacggcaaggctcatcagcagcaggaacagcggcaggccccagctggcgctgaccagcgagcgcgggttgaggttctcggtaaaggccatgtggt                    >  2:26651‑M1/1‑7 (MQ=255)                                                                                                                                               ggTGCTGgcgcccaggcgcaggccggcccacagcaccagcggcacggcaaggctcatcagcagcaggaacagcggcaggccccagctggcgctgaccagcgagcgccggttgaggttctcggtaaaggccatgtggt                    <  1:26651‑M1/137‑131 (MQ=255)                                                                                                                                                gTGCTGgcgccgaggcgcaggccggcccacagcaccagcggcacggcaaggctcatcagcagcaggaacagcggcaggccccagctggcgctgaccagcgagcgcgggttgaggttctcggtaaaggccatgtggtacatgtgcggca        <  7:58710‑M1/148‑143 (MQ=255)                                                                                                                                                 tGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCaccacc      <  1:128707/149‑1 (MQ=255)                                                                                                                                                  gCTGgcgcccaggcgcaggccggcccacagcaccagcggcacggcaaggctcatcagcagcaggaacagcggcaggccccagctggcgctgaccagcgagcgcgggttgaggttctcggtaaaggccatgtggtacatgtgcggcatga     <  4:104787‑M1/149‑146 (MQ=255)                                                                                                                                                  gCTGgcgcccaggcgcaggccggcccacagcaccagcggcacggcaaggctcatcagcagcaggaacagcggcaggccccagctggcgc                                                                 >  1:36587‑M1/1‑4 (MQ=255)                                                                                                                                                  gCTGgcgcccaggcgcaggccggcccacagcaccagcggcacggcaaggctcatcagcagcaggaacagcggcaggccccagctggcgc                                                                 <  2:36587‑M1/89‑86 (MQ=255)                                                                                                                                                  gCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCAccc     >  3:303004/1‑149 (MQ=255)                                                                                                                                                   cTGgcgcccaggcgcaggccggcccacagcaccagcggcacgacaaggctcatcagcagcaggaacagcggcaggccccagctggcgctgaccagcgagcgcgggttgaggttctcggtaaaggccatgtggtacatgtgcggcatgac    <  3:216148‑M1/149‑147 (MQ=255)                                                                                                                                                     gtgGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTgg  >  4:242521/1‑149 (MQ=255)                                                                                                                                                     ggcgcccaggcgcaggccggcccacagcaccagcggcacggcaaggctcatcagcagcaggaacagcggcaggccccagctggcgctgaccagcgagcgcgggttgaggttctcggtaaaggccatgtggtacatgtgcggcatgacga  >  2:205897‑M1/1‑1 (MQ=255)                                                                                                                                                     ggcgcccaggcgcaggccggcccacagcaccagcggcacggcaaggctcatcagcagcaggaacagcggcaggccccagctggcgctgaccagcgagcgcgggttgagggtctcggtaaaggccatgtggtacaggtgcggcatgacga  >  5:321317‑M1/1‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TGCTGGTGTTCTTCGCCTCGGCCATCGTCATGCCGCACATGTACCACATGGCCTTTACCGAGAACCTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGG  >  NC_002947/5334304‑5334600

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.