New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5654243 =	55 (1.090)	3 (0.060)	3/246	NT	5.9%	coding (232/1164 nt)	pgk	phosphoglycerate kinase
	?	NC_002947	5654288 =	43 (0.900)					coding (187/1164 nt)	pgk	phosphoglycerate kinase

CGCCCGACCGAAGGCGAATTCTCTGCCGAGAACAGCCTCAAGCCGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5654291‑5654243 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtcgGGCGGCCCAAGTGCGAGCAGACCATTACCGCTGCGCCCTTCTCCAGGGCCAGCTTGATGGTCGGCAGCGCTGCCAGGATACGCGCATCGCTGGCTACCACACCGTCCTTCACAGGCACGTTGAGGTCTTCGCGGATCAGTACGCG  >  NC_002947/5654288‑5654432                                                                                                                                                                                                    CGCCCGACCGAAGGCGAATTCTCTGCCGAGAACAGCCTCAAGCCGGTCGGGCGGCCCAAGTGCGAGCAGACCATTACCGCTGCGCCCTTCTCCAGGGCCAGCTTGATGGTCGGCAGCGCTGCCAGGATACGCGCATCGCTGGCTACCA                                                >  2:295590/1‑148  GCCCGACCGAAGGCGAATTCTCTGCCGAGAACAGCCTCAAGCCGGTCGGGCGGCCCAAGTGCGAGCAGACCATTACCGCTGCGCCCTTCTCCAGGGCCAGCTTGATGGTCGGCAGCGCT                                                                            >  1:224226/1‑119  GCCCGACCGAAGGCGAATTCTCTGCCGAGAACAGCCTCAAGCCGGTCGGGCGGCCCAAGTGCGAGCAGACCATTACCGCTGCGCCCTTCTCCAGGGCCAGCTTGATGGTCGGCAGCGCT                                                                            <  2:224226/119‑1                                              GTCGGGCGGCCCAAGTGCGAGCAGACCATTACCGCTGCGCCCTTCTCCAGGGCCAGCTTGATGGTCGGCAGCGCTGCCAGGATACGCGCATCGCTGGCTACCACACCGTCCTTCACAGGCACGTTGAGGTCTTCGCGGATCAGTACGCG  >  4:176740/1‑149                                                                                                                                                                                                    CGCCCGACCGAAGGCGAATTCTCTGCCGAGAACAGCCTCAAGCCGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5654291‑5654243 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtcgGGCGGCCCAAGTGCGAGCAGACCATTACCGCTGCGCCCTTCTCCAGGGCCAGCTTGATGGTCGGCAGCGCTGCCAGGATACGCGCATCGCTGGCTACCACACCGTCCTTCACAGGCACGTTGAGGTCTTCGCGGATCAGTACGCG  >  NC_002947/5654288‑5654432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.