New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5673501	54 (1.070)	3 (0.060)	3/246	NT	5.0%	coding (744/1881 nt)	rhlE‑II	ATP‑dependent RNA helicase
	?	NC_002947	= 5673537	62 (1.290)					coding (780/1881 nt)	rhlE‑II	ATP‑dependent RNA helicase

ACCGACCTCGCCGACAAGCTCCTGCACAACCCGGAGCGTATCGAGGTCACCCCGCCGAACACCACCGTCGAGCGTATCGAGCAGCGGGTATATCGCCTGCCTGCCAGCCACAAGCGTGCCTTGCTGGCGCACCTGATCACCCTGGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5673352‑5673501 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccATGCTTGGTTCGGGTGAACACCAACACCTGTTCCCAGGCGCCCAGGGTGATCAGGTGCGCCAGCAAGGCACGCTTGTGGCTGGCAGGCAGGCGATATACCCGCTGCTCGATACGCTCGACGGTGGTGTTCGGCGGGGTGACCTC  <  NC_002947/5673537‑5673394                                                                                                                                                                                                                                                                                                        ACCGACCTCGCCGACAAGCTCCTGCACAACCCGGAGCGTATCGAGGTCACCCCGCCGAACACCACCGTCGAGCGTATCGAGCAGCGGGTATATCGCCTGCCTGCCAGCCACAAGCGTGCCTTGCTGGCGCACCTGATCACCCTGGGCGC                                                                                                                                                   <  6:276899/149‑1                                              GTCACCCCGCCGAACACCACCGTCGAGCGTATCGAGCAGCGGGTATATCGCCTGCCTGCCAGCCACAAGCGTGCCTTGCTGGCGCACCTGATCACCCTGGGCGCCATGCTTGGTTCGGGTGAACACCAACACCTGTTCCCAGGCGCC                                                                                                        >  4:183732/1‑147                                               TCACCCCGCCGAACACCACCGTCGAGCGTATCGAGCAGCGGGTATATCGCCTGCCTGCCAGCCACAAGCGTGCCTTGCTGGCGCACCTGATCACCCTGGGCGCCATGCTTGGTTCGGGTGAACACCAACACCTGTTCCCAGGCGCCCAG                                                                                                     <  3:183732/149‑1                                                 ACCCCGCCGAACACCACCGTCGAGCGTATCGAGCAGCGGGTATATCGCCTGCCTGCCAGCCACAAGCGTGCCTTGCTGGCGCACCTGATCACCCTGGGCGCCATGCTTGGTTCGGGTGAACACCAACACCTGTTCCCAGGCGCCCAGG                                                                                                    <  1:12680/148‑1                                                                                                                                                  GCGCCATGCTTGGTTCGGGTGAACACCAACACCTGTTCCCAGGCGCCCAGGGTGATCAGGTGCGCCAGCAAGGCACGCTTGTGGCTGGCAGGCAGGCGATATACCCGCTGCTCGATACGCTCGACGGTGGTGTTCGGCGGGGTGACCT   <  1:24392/148‑1                                                                                                                                                   CGCCATGCTTGGTTCGGGTGAACACCAACACCTGTTCCCAGGCGCCCAGGGTGATCAGGTGCGCCAGCAAGGCACGCTTGTGGCTGGCAGGCAGGCGATATACCCGCTGCTCGATACGCTCGACGGTGGTGTTCGGCGGGGTGACCTC  >  2:199001/1‑148                                                                                                                                                   CGCCATGCTTGGTTCGGGTGAACACCAACACCTGTTCCCAGGCGCCCAGGGTGATCAGGTGCGCCAGCAAGGCACGCTTGTGGCTGGCAGGCAGGCGATATACCCGCTGCTCGATACGCTCGACGGTGGTGTTCGGCGGGGTGACCTC  >  2:203683/1‑148                                                                                                                                                                                                                                                                                                        ACCGACCTCGCCGACAAGCTCCTGCACAACCCGGAGCGTATCGAGGTCACCCCGCCGAACACCACCGTCGAGCGTATCGAGCAGCGGGTATATCGCCTGCCTGCCAGCCACAAGCGTGCCTTGCTGGCGCACCTGATCACCCTGGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5673352‑5673501 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccATGCTTGGTTCGGGTGAACACCAACACCTGTTCCCAGGCGCCCAGGGTGATCAGGTGCGCCAGCAAGGCACGCTTGTGGCTGGCAGGCAGGCGATATACCCGCTGCTCGATACGCTCGACGGTGGTGTTCGGCGGGGTGACCTC  <  NC_002947/5673537‑5673394

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.