New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5745143	52 (1.030)	4 (0.080)	3/244	NT	8.1%	coding (722/2451 nt)	glgP	glycogen phosphorylase
	?	NC_002947	= 5745173	41 (0.860)					coding (692/2451 nt)	glgP	glycogen phosphorylase

AAAAGTACTCCTGGCGAAGGCGCAGTTCCTGGCCGGCCTCGGTACTGTCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTTCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5744991‑5745143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagcgTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGAAGAGCTGC‑ACCTGGAGCGCTTCAACGCCGGTGACCATTTGGGGGCTGTGGCTGAAGTGGCGCGTGCCGAGAGCATTTCGCGTGTGCTTTACCCCGCCGACAGTACC  <  NC_002947/5745173‑5745031                                                                                                                                                                                                                                                                                                           AAAAGTACTCCTGGCGAAGGCGCAGTTCCTGGCCGGCCTCGGTACTGTCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTTC                                                                                                                                                       >  7:299377/1‑148                            CCTGGCCGGCCTCGGTACTGTCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTTCCAGC                                                                                                                                                   >  6:33987/1‑125                                         GGTACTGTCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTTCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGG                                                                                                              <  2:215590/149‑1                                          GTACTGTCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTTCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGA                                                                                                             <  4:267100/149‑1                                                   GCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTTCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGG                                                                                                              <  5:32172/139‑1                                                   GCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTTCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGG                                                                                                              >  6:32172/1‑139                                                                                                                                                   TCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGAAGAGCTGCTACCTGGAGCGCTTCAACGCCGGTGACCATTTGGGGGCTGTGGCTGAAGTGGCGCGTGCCGAGAGCATTTCGCGTGTGCTTTACCCCGCCGACAGTA    >  1:241646/1‑149                                                                                                                                                      AGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGAAGAGCTGC‑ACCTGGAGCGCTTCAACGCCGGTGACCATTTGGGGGCTGTGGCTGAAGTGGCGCGTGCCGAGAGCATTTCGCGTGTGCTTTACCCCGCCGACAGTACC  >  8:293313/1‑147                                                                                                                                                                                                                                                                                                           AAAAGTACTCCTGGCGAAGGCGCAGTTCCTGGCCGGCCTCGGTACTGTCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTTCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5744991‑5745143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagcgTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGAAGAGCTGC‑ACCTGGAGCGCTTCAACGCCGGTGACCATTTGGGGGCTGTGGCTGAAGTGGCGCGTGCCGAGAGCATTTCGCGTGTGCTTTACCCCGCCGACAGTACC  <  NC_002947/5745173‑5745031

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.