New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5745143	52 (1.030)	4 (0.080)	3/244	NT	8.1%	coding (722/2451 nt)	glgP	glycogen phosphorylase
	?	NC_002947	= 5745173	41 (0.860)					coding (692/2451 nt)	glgP	glycogen phosphorylase

GGTACTGTCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTTCGACACTGCCGCCAAAGCTGATCGGGTA  >  NC_002947/5745031‑5745309                                                                                                                                                |                                                                                                                                         ggTACTGTCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGAcgct                                                                                                                                      >  8:293313‑M2/1‑143 (MQ=255)   tACTGTCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTAGCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGAcgctgga                                                                                                                                   >  1:241646‑M2/1‑142 (MQ=255)        tCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACg                                                                                                                             >  5:6455/1‑149 (MQ=255)          ggcggGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCa                                                                                                                               <  1:75697/145‑1 (MQ=255)          ggcggGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCa                                                                                                                               >  2:75697/1‑145 (MQ=255)          ggcggGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGc                                                                                                                            >  3:62954/1‑148 (MQ=255)             ggggTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAG‑CCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGcc                                                                                                                       >  8:38650/1‑149 (MQ=255)                      cacaCGCGAAATGCTCTCGGCACGCTCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGTATCCACGCCAGCCGACTACCg                                                                                                               <  2:145514/149‑1 (MQ=255)                        cacGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGc                                                                                                             >  5:77194/1‑149 (MQ=255)                         acGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCg                                                                                                            >  6:109408/1‑149 (MQ=255)                           gcgAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCgtg                                                                                                          >  1:221781/1‑149 (MQ=255)                             gAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTc                                                                                                        >  4:294639/1‑149 (MQ=255)                               aaTGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGt                                                                                                      <  4:62954/149‑1 (MQ=255)                                aTGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTa                                                                                                     <  3:294639/149‑1 (MQ=255)                                aTGCTCTCGGCACGCGCCACTTCAGCCACAG‑CCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAg                                                                                                    <  7:38650/149‑1 (MQ=255)                                      tcGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAAc                                                                                               >  4:146347/1‑149 (MQ=255)                                       cGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCgg                                                                                                              >  1:252811/1‑133 (MQ=255)                                       cGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCgg                                                                                                              <  2:252811/133‑1 (MQ=255)                                           aCGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAAccgccc                                                                                          <  2:221781/149‑1 (MQ=255)                                               gcCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCAc                                                                                      >  7:117892/1‑149 (MQ=255)                                                          ctaaGCCCCCATATGGTCACCGGCGTTGAAGCGCTGCAGGT‑GCAGCTCTTCCTGCGCCCGCGCGCGCCACAGGCGCAGTGTGTTGACGCTGGATCCACGCCAGCGGACTACGGGCGTGTCGTAGGCAACCGCGCGCACCGTCTCGCCCg                                                                           <  2:119172/146‑1 (MQ=255)                                                           acaGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCgg                                                                          >  1:31007/1‑149 (MQ=255)                                                               cccccAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGccac                                                                      <  5:89030/149‑1 (MQ=255)                                                                  ccAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGcc                                                                                                                       >  6:58155/1‑97 (MQ=255)                                                                  ccAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGcc                                                                                                                       <  5:58155/97‑1 (MQ=255)                                                                  ccAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGccacca                                                                    >  7:74394/1‑148 (MQ=255)                                                                    aaaTGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATAc                                                                 <  3:146347/149‑1 (MQ=255)                                                                    aaaTGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATAc                                                                 >  6:65774/1‑149 (MQ=255)                                                                       tGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTg                                                              <  8:117892/149‑1 (MQ=255)                                                                        ggTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTgg                                                             >  2:83763/1‑149 (MQ=255)                                                                              cGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAAccgcccgc                                                                                        >  5:152869/1‑116 (MQ=255)                                                                              cGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAAccgcccgc                                                                                        <  6:152869/116‑1 (MQ=255)                                                                                  gTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTAc                                                   <  5:65774/149‑1 (MQ=255)                                                                                      aaGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCt                                               >  3:88740/1‑149 (MQ=255)                                                                                       aGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCtt                                              >  1:141327/1‑149 (MQ=255)                                                                                          gcTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCa                                           <  5:109408/149‑1 (MQ=255)                                                                                            tCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATa                                                                  <  7:103056/124‑1 (MQ=255)                                                                                            tCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATa                                                                  >  8:103056/1‑124 (MQ=255)                                                                                             ccAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCg                                        <  8:259826/149‑1 (MQ=255)                                                                                              cAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGt                                       >  4:285785/1‑149 (MQ=255)                                                                                                  t‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCAc                                   >  2:272722/1‑149 (MQ=255)                                                                                                            tCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGAcgctggaagagctgcacctggagcgcttcaacgccggtgaccatttgggggctgtggctgaagtggcgcgtgccgagagcatttcgcgtgtgctttaccccgccgacagtac                          <  4:267100‑M2/149‑113 (MQ=255)                                                                                                             ccAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGAcgctggaagagctgcacctggagcgcttcaacgccggtgaccatttgggggctgtggctgaagtggcgcgtgccgagagcatttcgcgtgtgctttaccccgccgacagtacc                         <  2:215590‑M2/149‑114 (MQ=255)                                                                                                             ccAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGAcgctggaagagctgcacctggagcgcttcaacgccggtgaccatttgggggctgtggctgaagtggcgcgtgccgagagcatttcgcgtgtgctttaccccgc                                   >  6:32172‑M2/1‑36 (MQ=255)                                                                                                             ccAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGAcgctggaagagctgcacctggagcgcttcaacgccggtgaccatttgggggctgtggctgaagtggcgcgtgccgagagcatttcgcgtgtgctttaccccgc                                   <  5:32172‑M2/139‑104 (MQ=255)                                                                                                             ccAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTTCGa                           <  1:83763/147‑1 (MQ=255)                                                                                                              cAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTTCGacac                        <  3:285785/149‑1 (MQ=255)                                                                                                                                  ggCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTTCGACACTGCCGCCAAAGCTGATCggg    <  2:31007/149‑1 (MQ=255)                                                                                                                                    cgcAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTTCGACACTGCCGCCAAAGCTGATCGGGTa  <  8:74394/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                         GGTACTGTCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGT‑GCAGCTCTTCCAGCGCCCGCGCGCGCCACAGGCGCAGGGTGTTGACGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTTCGACACTGCCGCCAAAGCTGATCGGGTA  >  NC_002947/5745031‑5745309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.