| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5777084 = | 59 (1.170) | 3 (0.060) | 3/246 | NT | 5.2% | coding (1401/1698 nt) | betA‑II | choline dehydrogenase |
| ? | NC_002947 | 5777121 = | 54 (1.120) | coding (1438/1698 nt) | betA‑II | choline dehydrogenase | |||||
ATCGACCACGCGCAGGCCCTTCATGCCGTGCACGCGGCCTTCACCATCGACCACTGCCATGTCGTCGGTGCCCATCTTGCACGAGCAGGACGGGTGGAAGGCGGTTTCGGCGTGCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5777201‑5777084‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctcgTGCAAGATGGGCACCGACGACATGGCAGTGGTCGATGGTGAAGGCCGCGTGCACGGCATGAAGGGCCTGCGCGTGGTCGATGCCTCGATCATGCCGCTGATCATCACCGGCAACCTCAACGCCACCACGATCATGATCGCCGAGAA > NC_002947/5777121‑5777266 ATCGACCACGCGCAGGCCCTTCATGCCGTGCACACGGCCTTCACCATCGACCACTGCCATGTCGTCGGTGCCCATCTTGCACGAGCAGGACGGGTGGAAGGCGGTTTCGGCGTGCTCG > 7:280154/1‑118ATCGACCACGCGCAGGCCCTTCATGCCGTGCACACGGCCTTCACCATCGACCACTGCCATGTCGTCGGTGCCCATCTTGCACGAGCAGGACGGGTGGAAGGCGGTTTCGGCGTGCTCG < 8:280154/118‑1 TGCACGAGCAGGACGGGTGGAAGGCGGTTTCGGCGTGCTCGTGCAAGATGGGCACCGACGACATGGCAGTGGTCGATGGTGAAGGCCGCGTGCACGGCATGAAGGGCCTGCGCGTGGTCGATGCC < 7:145472/125‑1 TGCACGAGCAGGACGGGTGGAAGGCGGTTTCGGCGTGCTCGTGCAAGATGGGCACCGACGACATGGCAGTGGTCGATGGTGAAGGCCGCGTGCACGGCATGAAGGGCCTGCGCGTGGTCGATGCC > 8:145472/1‑125 ACGAGCAGGACGGGTGGAAGGCGGTTTCGGCGTGCTCGTGCAAGATGGGCACCGACGACATGGCAGTGGTCGATGGTGAAGGCCGCGTGCACGGCATGAAGGGCCTGCGCGTGGTCGATGCCTCGATCATGCCGCTGATCATCACCGG > 3:213320/1‑148 TGCTCGTGCAAGATGGGCACCGACGACATGGCAGTGGTCGATGGTGAAGGCCGCGTGCACGGCATGAAGGGCCTGCGCGTGGTCGATGCCTCGATCATGCCGCTGATCATCACCGGCAACCTCAACGCCACCACGATCATGATCGCC > 2:1917/1‑147 CTCGTGCAAGATGGGCACCGACGACATGGCAGTGGTCGATGGTGAAGGCCGCGTGCACGGCATGAAGGGCCTGCGCGTGGTCGATGCCTCGATCATGCCGCTGATCATCACCGGCAACCTCAACGCCACCACGATCATGATCGCCGA < 5:60835/147‑1 CTCGTGCAAGATGGGCACCGACGACATGGCAGTGGTCGATGGTGAAGGCCGCGTGCACGGCATGAAGGGCCTGCGCGTGGTCGATGCCTCGATCATGCCGCTGATCATCAACGGCAACCTCAACGCCACCACGATCATGATCGCCGAG > 7:234488/1‑148 TCGTGCAAGATGGGCACCGACGACATGGCAGTGGTCGATGGTGAAGGCCGCGTGCACGGCATGAAGGGCCTGCGCGTGGTCGATGCCTCGATCATGCCGCTGATCATCACCGGCAACCTCAACGCCACCACGATCATGATCGCCGAG > 5:227763/1‑147 GTGCAAGATGGGCACCGACGACATGGCAGTGGTCGATGGTGAAGGCCGCGTGCACGGCATGAAGGGCCTGCGCGTGGTCGATGCCTCGATCATGCCGCTGATCATCACCGGCAACCTCAACGCCACCACGATCATGATCGCCGAGAA < 5:70626/147‑1 ATCGACCACGCGCAGGCCCTTCATGCCGTGCACGCGGCCTTCACCATCGACCACTGCCATGTCGTCGGTGCCCATCTTGCACGAGCAGGACGGGTGGAAGGCGGTTTCGGCGTGCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5777201‑5777084‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctcgTGCAAGATGGGCACCGACGACATGGCAGTGGTCGATGGTGAAGGCCGCGTGCACGGCATGAAGGGCCTGCGCGTGGTCGATGCCTCGATCATGCCGCTGATCATCACCGGCAACCTCAACGCCACCACGATCATGATCGCCGAGAA > NC_002947/5777121‑5777266 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |