New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6027893 =	47 (0.930)	3 (0.070)	3/216	NT	8.4%	intergenic (‑37/+74)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase
	?	NC_002947	6027950 =	26 (0.620)					intergenic (‑94/+17)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase

TTCAAACAGTCGGGCAACGGCCGTGACAAGTCGCTGCACGCACTGGAGAAGTACACCGAGCTGAAGGCGACCTGGATCAAGCTGTAACCCGGTAGGTCCTTTTCGCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6028053‑6027893 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaggagcgggcttgcccgcGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTCGCCACCATCGTACTGGT  >  NC_002947/6027950‑6028094                                                                                                                                                                                                                                                                                                                    TTCAAACAGTCGGGCAAAGGCCGTGACAAGTCGCTGCACGCACTGGAGAAGTACACCGAGCTGAAGGCGACCTGGATCAAGCTGTAACCCGGTAGGTCCTTTTCGCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGCCAGTTGAAGGAGC                                                                                                                                                               >  8:90209/1‑149    AAACAGTCGGGCAACGGCCGTGACAAGTCGCTGCACGCACTGGAGAAGTACACCGAGCTGAAGGCGACCTGGATCAAGCTGTAACCCGGTAGGTCCTTTTCGCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGG                                                                                                                                                             <  2:187913/148‑1         GTCGGGCAACGGCCGTGACAAGTCGCTGCACGCACTGGAGAAGTACACCGAGCTGAAGGCGACCTGGATCAAGCTGTAACCCGGTAGGTCCTTTTCGCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGGC                                                                                                                                                           <  2:219599/145‑1         GTCGGGCAACGGCCGTGACAAGTCGCTGCACGCACTGGAGAAGTACACCGAGCTGAAGGCGACCTGGATCAAGCTGTAACCCGGTAGGTCCTTTTCGCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGGC                                                                                                                                                           >  1:219599/1‑145          TCGGGCAACGGCCGTGACAAGTCGCTGCACGCACTGGAGAAGTACACCGAGCTGAAGGCGACCTGGATCAAGCTGTAACCCGGTAGGTCCTTTTCGCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCC                                                                                                                                                      >  3:194856/1‑149             GGCAACGGCCGTGACAAGTCGCTGCACGCACTGGAGAAGTACACCGAGCTGAAGGCGACCTGGATCAAGCTGTAACCCGGTAGGTCCTTTTCGCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGC                                                                                                                                                   <  6:58627/149‑1                                     CACGCACTGGAGAAGTACACCGAGCTGAAGGCGACCTGGATCAAGCTGTAACCCGGTAGGTCCTTTTCGCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGGTGCAGGAGCGGGCTTGCCCG                                                                                                                                                    >  3:150654/1‑124                                                                                                                 GCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTC                                                                                        <  7:3840/108‑1                                                                                                                    CGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTA                                                                                                                               >  8:200/1‑66                                                                                                                    CGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTA                                                                                                                               <  7:200/66‑1                                                                                                                                             TGCAGGTGGGGGCTTGCCCGCGAAAAGGACGTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTC                   <  3:7637/149‑1                                                                                                                                               CAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCAT                      >  5:127565/1‑144                                                                                                                                               CAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCAT                      <  6:127565/144‑1                                                                                                                                                 GGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGC                                                                           <  8:300764/89‑1                                                                                                                                                 GGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGC                                                                           >  7:300764/1‑89                                                                                                                                                       GGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTCGCCACCATCG         <  2:61744/149‑1                                                                                                                                                             CCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTCGCCACCATCGTACTGG   >  3:203189/1‑149                                                                                                                                                              CCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTCGCCACCATCGTACTGGT  >  6:20426/1‑149                                                                                                                                                              CCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTCGCC                <  6:189592/135‑1                                                                                                                                                              CCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTCGCC                >  5:189592/1‑135                                                                                                                                                                                                                                                                                                                    TTCAAACAGTCGGGCAACGGCCGTGACAAGTCGCTGCACGCACTGGAGAAGTACACCGAGCTGAAGGCGACCTGGATCAAGCTGTAACCCGGTAGGTCCTTTTCGCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6028053‑6027893 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaggagcgggcttgcccgcGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTCGCCACCATCGTACTGGT  >  NC_002947/6027950‑6028094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.