New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6027893 =	47 (0.930)	3 (0.070)	3/216	NT	8.4%	intergenic (‑37/+74)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase
	?	NC_002947	6027950 =	26 (0.620)					intergenic (‑94/+17)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase

CCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTCGCCACCATCGTACTGGT  >  NC_002947/6027806‑6028094                                                                                                                                                  |                                                                                                                                                 cccGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGaa                                                                                                                                                >  1:290523/1‑147 (MQ=255)   cGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGG‑CCCATTTGC‑GGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGa                                                                                                                                           <  7:251709/149‑1 (MQ=255)    gACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGa                                                                                                                                           <  3:226407/149‑1 (MQ=255)     acacTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGAc                                                                                                                                          >  3:212570/1‑149 (MQ=255)       acTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGAcc                                                                                                                                         >  7:89189/1‑148 (MQ=255)        cTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGCGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTa                                                                                                                                       <  5:259326/149‑1 (MQ=255)              aCCGAGGCCCTTACGGCTATTTAGGAACCCCACCGCATAACAGCCTCCCAGCAAAATTTCCCCGGGG‑CCCATTTGGGGGCAAGCCCGTTCCTGCAAGGGTCGCCAAGCCGGGCAGGAGGGGGGTTGCCCGCGAAAAGGACCTACCGGGt                                                                                                                                 <  8:187179/149‑1 (MQ=255)                cgttGCCAGTACGGCTAAGTAGGTACCCCAACGAATTACACCCTCCCAGCAAATATTTCCAGGGG‑CCAATTTGCGGGAATGCCCGCTCCTGCAACGGTCGCTATGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTa                                                                                                                               <  4:212570/146‑1 (MQ=255)                cGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGtt                                                                                                                                >  2:172324/1‑148 (MQ=255)                  aTGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACa                                                                                                                             <  8:89189/149‑1 (MQ=255)                             gCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAg                                                                                                                  >  6:278935/1‑149 (MQ=255)                                  gTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGc                                                                                                             <  2:77048/149‑1 (MQ=255)                                       tACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCtt                                                                                                          >  1:61744/1‑148 (MQ=255)                                        aCCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTAc                                                                                                                              <  2:211671/126‑1 (MQ=255)                                             aaCGCATTACAGCCTCCCAGCCAATATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAAAGGTCGCGAAGACCTGCAGGAGCGGGCTTGGCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCgg                                                                                                  >  7:90209/1‑149 (MQ=255)                                                     aCAGCCTCCCAGCCAATATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCCCTCCAGCAACGGTCGCGAAGACCTGGAGGAGCGGGCGTGCCCGCGAAAAGGACCAACCCGGTTAAAGCTTTAACCAGGTCGCCGTAAGCTCGGTTTACta                                                                                           >  2:307835/1‑147 (MQ=255)                                                     aCAGCCTCCCACCCAATATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGCCGCTAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTAc                                                                                             <  1:307835/146‑1 (MQ=255)                                                            cccAGCCACTATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATACAGGTCGCCTTCAGCTCGGTGTACTTCTCCAgtg                                                                                   >  4:194856/1‑149 (MQ=255)                                                                   aaTATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAg                                                                            <  2:290523/149‑1 (MQ=255)                                                                         tCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATGCAGGTCGCCTTCAGCTCGGTGTAc                                                                                             >  7:171446/1‑126 (MQ=255)                                                                         tCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTAc                                                                                             <  8:171446/126‑1 (MQ=255)                                                                            cgggg‑CCCATTTGCGGGAATGCCCGCTCCTCCAACGGTCGCCAACACCTGCAGTAGGGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTc                                                                   <  1:149013/148‑1 (MQ=255)                                                                            aGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTc                                                                   <  1:172324/149‑1 (MQ=255)                                                                             gggg‑CCCATTTGCGGGCAAGCCCGGTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCa                                                                  <  4:41830/149‑1 (MQ=255)                                                                                    cATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGTGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCg                                                            <  7:39111/149‑1 (MQ=255)                                                                                         GCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGcc                                                       <  6:58627‑M1/149‑1 (MQ=255)                                                                                          CGGGCAAGCCCGCTCCTGCACCGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAgtgcgtg                                                                               >  3:150654‑M1/1‑124 (MQ=255)                                                                                            GGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGa                                                    >  3:194856‑M1/1‑149 (MQ=255)                                                                                                 gcccgctcctgcaggtcttcgcgaccgttgcaggagcgggcttgcccgcGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTtctc                                                                                        <  7:3840‑M2/59‑1 (MQ=255)                                                                                                 GCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGAc                                                   <  2:219599‑M1/145‑1 (MQ=255)                                                                                                 GCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGAc                                                   >  1:219599‑M1/1‑145 (MQ=255)                                                                                                   CCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGttt                                              <  2:187913‑M1/148‑1 (MQ=255)                                                                                                    cgctcctgcaggtcttcgcgaccgttgcaggagcgggcttgcccgcGAAAAGGACCTACCGGGTTa                                                                                                                               >  8:200‑M2/47‑66 (MQ=255)                                                                                                    cgctcctgcaggtcttcgcgaccgttgcaggagcgggcttgcccgcGAAAAGGACCTACCGGGTTa                                                                                                                               <  7:200‑M2/20‑1 (MQ=255)                                                                                                     GCTCCTTCAACTGGCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCTTTGCCCGACTGTTTGaa                                           >  8:90209‑M1/1‑149 (MQ=255)                                                                                                                     cgAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGcgcg                           <  8:172553/149‑1 (MQ=255)                                                                                                                     cgAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGcgcg                           <  4:88119/149‑1 (MQ=255)                                                                                                                        aGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGt                         >  7:300775/1‑148 (MQ=255)                                                                                                                        aGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTc                        <  5:58627/149‑1 (MQ=255)                                                                                                                             tgcaggtgggggcttgcccgcGAAAAGGACGTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTc                   <  3:7637‑M2/128‑1 (MQ=255)                                                                                                                               caggagcgggcttgcccgcGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCAt                      <  6:127565‑M2/125‑1 (MQ=255)                                                                                                                               caggagcgggcttgcccgcGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCAt                      >  5:127565‑M2/20‑144 (MQ=255)                                                                                                                                 ggagcgggcttgcccgcGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGc                                                                           >  7:300764‑M2/18‑89 (MQ=255)                                                                                                                                 ggagcgggcttgcccgcGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGc                                                                           <  8:300764‑M2/72‑1 (MQ=255)                                                                                                                                       ggcttgcccgcGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTCGCCACCATCg         <  2:61744‑M2/138‑1 (MQ=255)                                                                                                                                             cccgcGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTCGCCACCATCGTACTgg   >  3:203189‑M2/6‑149 (MQ=255)                                                                                                                                              ccgcGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTCGcc                <  6:189592‑M2/131‑1 (MQ=255)                                                                                                                                              ccgcGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTCGcc                >  5:189592‑M2/5‑135 (MQ=255)                                                                                                                                              ccgcGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTCGCCACCATCGTACTGGt  >  6:20426‑M2/5‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                 CCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGG‑CCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTCGCCACCATCGTACTGGT  >  NC_002947/6027806‑6028094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.