| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6048398 = | 81 (1.610) | 3 (0.060) | 3/246 | NT | 4.1% | coding (873/1050 nt) | PP_5300 | LysR family transcriptional regulator |
| ? | NC_002947 | 6048434 = | 63 (1.310) | coding (909/1050 nt) | PP_5300 | LysR family transcriptional regulator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGGTCAGCTCTTCGAACAAGGTCTGCACCGAGCGCAACGCCCGGCAATCCGGCCGGGTCAGCAACCACAACTGAGTGTCGCAGCCGGGCAGGGGGCCGCTGAGTGCATCCACCCCGGGCAGCGCATGCACCATGTAGTCCGGCAGTGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6048549‑6048398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgccCGGGGTGGATGCACTCAGCGGCCCCCTGCCCGGCTGCGACACTCAGTTGTGGTTGCTGACCCGGCCGGATTGCCGGGCGTTGCGCTCGGTGCAGACCTTGTTCGAAGAGCTGACCCCGCGGTTGCGTGACGCGATGCTCTGAG > NC_002947/6048434‑6048576 GGGTCAGCTCTTCGAACAAGGTCTGCACCGAGCGCAACGCCCGGCAATCCGGCCGGGTCAGCAACCACAACTGAGTGTCGCAGCCGGGCAGGGGGCCGCTGAGTGCATCCACCCCGGGCAGCGCATGCACCATGTAGTCCGGCAGTGCT > 4:133093/1‑149 GCAGGGGGCCGCTGAGTGCATCCACCCCGGGCAGCGCATGCACCATGTAGTCCGGCAGTGC < 1:163883/61‑1 GCAGGGGGCCGCTGAGTGCATCCACCCCGGGCAGCGCATGCACCATGTAGTCCGGCAGTGC > 2:163883/1‑61 CGGGCAGCGCATGCACCATGTAGTCCGGCAGTGCTGCCCGGGGTGGATGCACTCAGCGGCCCCCTGCCCGGCTGCGACACTCAGTTGTGGTTGCTGACCCGGCCGGATTGCCGGGCGTTGCGCTCGGTGCAGACCTTGTTCGAAGAGCT > 1:14981/1‑149 CGCATGCACCATGTAGTCCGGCAGTGCTGCCCGGGGTGGATGCACTCAGCGGCCCCCTGCCCGGCTGCGACACTCAGTTGTGGTTGCTGACCCGGCCGGATTGCCGG > 7:189206/1‑107 CGCATGCACCATGTAGTCCGGCAGTGCTGCCCGGGGTGGATGCACTCAGCGGCCCCCTGCCCGGCTGCGACACTCAGTTGTGGTTGCTGACCCGGCCGGATTGCCGG < 8:189206/107‑1 GCTGCCCGGGGTGGATGCACTCAGCGGCCCCCTGCCCGGCTGCGACACTCAGTTGTGGTTGCTGACCCGGCCGGATTGCCGGGCGTTGCGCTCGGTGCAGACCTTGTTCGAAGAGCTGACCCCGCGGTTGCGTGACGCGATGCTCTGAG < 3:70604/149‑1 GCTGCCCGGGGTGGATGCACTCAGCGGCCCCCTGCCCGGCTGCGACACTCAGTTGTGGTTGCTGACCCGGCCGGATTGCCGGGCGTTGCGCTCGGTGCAGACCTTGTTCGAAGAGCTGACCCCGCGGTTGCGTGACGCGATGCTCTGAG < 4:60414/149‑1 GCTGCCCGGGGTGGATGCACTCAGCGGCCCCCTGCCCGGCTGCGACACTCAGTTGTGGTTGCTGACCCGGCCGGATTGCCGGGCGTTGCGCTCGGTGCAGACCTTGTTCGAAGAGCTGACCCCGCGGTTGCGTGACGCGATGCTCTGAG > 7:52757/1‑149 GCCCGGGGTGGATGCACTCAGCGGCCCCCTGCCCGGCTGCGACACTCAGTTGTGGTTGCTGACCCGGCCGGATTGCCGGGCGTTGCGCTCGGTGCAGACCTTGTTCGAAGAGCTGACCCCGCGGTTGCGTGAC < 5:130345/133‑1 GCCCGGGGTGGATGCACTCAGCGGCCCCCTGCCCGGCTGCGACACTCAGTTGTGGTTGCTGACCCGGCCGGATTGCCGGGCGTTGCGCTCGGTGCAGACCTTGTTCGAAGAGCTGACCCCGCGGTTGCGTGAC > 6:130345/1‑133 GGGTCAGCTCTTCGAACAAGGTCTGCACCGAGCGCAACGCCCGGCAATCCGGCCGGGTCAGCAACCACAACTGAGTGTCGCAGCCGGGCAGGGGGCCGCTGAGTGCATCCACCCCGGGCAGCGCATGCACCATGTAGTCCGGCAGTGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6048549‑6048398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgccCGGGGTGGATGCACTCAGCGGCCCCCTGCCCGGCTGCGACACTCAGTTGTGGTTGCTGACCCGGCCGGATTGCCGGGCGTTGCGCTCGGTGCAGACCTTGTTCGAAGAGCTGACCCCGCGGTTGCGTGACGCGATGCTCTGAG > NC_002947/6048434‑6048576 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |