New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 100459	31 (0.620)	5 (0.110)	5/224	NT	13.9%	intergenic (‑51/+71)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
	?	NC_002947	= 100507	35 (0.800)					intergenic (‑99/+23)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein

CCAGCTTGGCCAGGGCGTACTGGATCGAGCGAGTGATGCCCAGGCGTGGGTCGGTCAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGCCAGGTGCTGGTCCTTGAGCTTCACGTAGTTGCCGGCGCTGTAGGAGAAAAA  >  NC_002947/100312‑100607                                                                                                                                                     |                                                                                                                                                     ccAGCTTGGCCAGGGCGTACTGGATCGAGCGAGTGATGCCCAGGCGTGGGTCGGTCAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCt                                                                                                                                                     <  7:100423/149‑1 (MQ=255)   aGCTTGGCCAGGGCGTACTGGATCGAGCGAGTGATGCCCAGGCGTGGGTCGGTCAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTcc                                                                                                                                                   >  3:255496/1‑149 (MQ=255)        ggCCAGGGCGTACTGGATCGAGCGAGTGATGCCCAGGCGTGGGTCGGTCAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCcac                                                                                                                                                <  8:2877/147‑1 (MQ=255)         gCCAGGGCGTACTGGATCGAGCGAGTGATGCCCAGGCGTGGGTCGGGCAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAg                                                                                                                                              <  7:167563/148‑1 (MQ=255)           cAGGGCGTACTGGATCGAGCGAGTGATGCCCAGGCGTGGGTCGGTCAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCca                                                                                                                                                 >  1:26371/1‑143 (MQ=255)           cAGGGCGTACTGGATCGAGCGAGTGATGCCCAGGCGTGGGTCGGTCAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCca                                                                                                                                                 <  2:26371/143‑1 (MQ=255)           cAGGGCGTACTGGATCGAGCGAGTGATGCCCAGGCGTGGGTCGGTCAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGt                                                                                                                                            >  4:46211/1‑148 (MQ=255)            aGGGCGTACTGGATCGAGCGAGTGATGCCCAGGCGTGGGTCGGTCAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTa                                                                                                                                           >  6:324745/1‑148 (MQ=255)                 gTACTGGATCGAGCGAGTGATGCCCAGGCGTGGGTCGGTCAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCccccgcaggttgagtgg                                                                                                                                     >  4:80796‑M1/1‑132 (MQ=255)                                agTGATGCCCAGGCGTGGGTCGGTCAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGc                                                                                                                      >  3:51851/1‑149 (MQ=255)                                    aTGCCCAGGCGTGGGTCGGTCAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCAc                                                                                                                   <  4:51851/148‑1 (MQ=255)                                       cccAGGCGTGGGTCGGTCAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCaa                                                                                                               <  4:255496/149‑1 (MQ=255)                                                 ggtcggtcAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGg                                                                                                     <  4:126362‑M2/149‑2 (MQ=255)                                                   tcggtaAGGGTGCCGTCGAGTTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCccccgcaggttgagtggccccttcaaggcctgcgctttacctgtgggagcg                                                                                                   <  4:185942‑M1/149‑52 (MQ=255)                                                     ggtcAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCccccgcaggttgagtggccccttcaaggcctgcgctttacctgtgggagcggg                                                                                                 <  3:80796‑M1/149‑54 (MQ=255)                                                      gtcAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGgcgggc                                                                                                >  4:103766‑M2/1‑143 (MQ=255)                                                            gggccGTCGAGGTCGACGAGGATGTTTGGCTGGTGCATGTCCAGGGTTCCACTTGATTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGgcgggcatgccc                                                                                          >  4:205221‑M2/3‑137 (MQ=255)                                                                  tCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGc                                                                                                                      >  1:62798/1‑115 (MQ=255)                                                                  tCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGc                                                                                                                      <  2:62798/115‑1 (MQ=255)                                                                     aGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCg                                                                                 >  4:94714/1‑149 (MQ=255)                                                                        tCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGt                                                                               >  2:125269/1‑148 (MQ=255)                                                                           aaGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCccccgcaggttgagtggccccttcaaggcctgcgctttacctgtgggagcgggcatgcccgcg                                                                                       >  6:295643‑M1/1‑74 (MQ=255)                                                                           aaGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCccccgcaggttgagtggccccttcaaggcctgcgctttacctgtgggagcgggcatgcccgcg                                                                                       <  5:295643‑M1/137‑64 (MQ=255)                                                                                gATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCACCCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGt                                                                      >  2:165309/1‑149 (MQ=255)                                                                                         cTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAg                                                             >  2:194685/1‑149 (MQ=255)                                                                                         cTGGTGCATGTACAGGGTGCCACTTGAGTGCTGCGTGGCCTTCT‑GCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTa                                                              <  2:57490/148‑1 (MQ=255)                                                                                          tGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCTGTCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAgggg                                                                                                                       >  1:224174/1‑91 (MQ=255)                                                                                          tGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAgggg                                                                                                                       <  2:224174/90‑1 (MQ=255)                                                                                            gTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCt                                                          >  3:208227/1‑149 (MQ=255)                                                                                                   tACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGc                                                     >  2:118460/1‑147 (MQ=255)                                                                                                      aGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGCCAGGt                                                >  6:182476/1‑149 (MQ=255)                                                                                                        ggTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCACCCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGCCAGGTGc                                              <  3:46211/149‑1 (MQ=255)                                                                                                          ttCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGCCAGGTGCTg                                            <  5:324745/149‑1 (MQ=255)                                                                                                             cACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGCCAGGTGCTGGtt                                         >  3:43215/1‑148 (MQ=255)                                                                                                                   aGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGCCAGGTGCTGGTCCTTGa                                    <  1:118460/148‑1 (MQ=255)                                                                                                                     tgctgcGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGCCAGGTGCTGGTCCTTGAGCt                                 >  4:69470/1‑149 (MQ=255)                                                                                                                               ccTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGCCAGGTGCTGGTCCTTGAGCTTCACGTAGtt                       <  1:125269/149‑1 (MQ=255)                                                                                                                               ccTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGCCAGGTGCTGGTCCTTGAGCTTCACGTAGtt                       <  3:94714/149‑1 (MQ=255)                                                                                                                               ccTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGCCAGGTGCTGGTCCTTGAGCTTCACGTAGtt                       >  1:85782/1‑149 (MQ=255)                                                                                                                                    t‑tcGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGCCAGGTGCTGGTCCTTGAGCTTCACGTAGTTGCCgg                  >  3:60528/1‑149 (MQ=255)                                                                                                                                    t‑tcGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGCCAGGTGCTGGTCCTTGAGCTTCACGTAGTTGCCgg                  <  3:126362/149‑1 (MQ=255)                                                                                                                                       cgcgGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGgcgggcatgcccgcgaagaaggccacgcagcactcaagtggaaccctgtacatgcaccagcaaaacatcctctt                            <  5:295643‑M2/137‑75 (MQ=255)                                                                                                                                       cgcgGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGgcgggcatgcccgcgaagaaggccacgcagcactcaagtggaaccctgtacatgcaccagcaaaacatcctctt                            >  6:295643‑M2/1‑63 (MQ=255)                                                                                                                                        gcgGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGCCAGGTGCTGGTCCTTGAGCTTCACGTAGTTGCCGgcgc               >  1:252178/1‑149 (MQ=255)                                                                                                                                        gcgGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGCCAGGTGCTGGTCCTTGAGCTTCACGTAGTTGCCGgcg                <  4:208227/148‑1 (MQ=255)                                                                                                                                          gggCATGCCCGCccccgcaggttgagtggccccttcaaggcctgcgctttacctgtgggagcgggcatgcccgcgaagaaggccacgcagcaatcaagtggaaccctggacatgcaccagccaaacatcctcgtcgacctcgacggccc             >  4:205221‑M1/1‑12 (MQ=255)                                                                                                                                                gcccgcccccgcaggttgagtggccccttcaaggcctgcgctttacctgtgggagcgggcatgcccgcgaagaaggccacgcagcactcaagtggaaccctgtacatgcaccagcaaaacatcctcttcgacctcgacggcaccctgac       >  4:103766‑M1/1‑6 (MQ=255)                                                                                                                                                 cccGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGgcgggcatgcccgcgaagaaggccacgcagcactcaagtggaaccctgtacatgcaccagcaaaacatcctcttcgacctcgacggcaccctgacc      <  3:80796‑M2/149‑97 (MQ=255)                                                                                                                                                   cGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGgcgggcatgcccgcgaagaaggccacgcagcactcaagtggaaccctgtacatgcaccagcaaaacatcctcttcgaactcgacggcacccttaccga    <  4:185942‑M2/149‑99 (MQ=255)                                                                                                                                                     cccccgcaggttgagtggccccttcaaggcctgcgctttacctgtgggagcgggcatgcccgcgaagaaggccacgcagcactcaagtggaaccctgtacatgcaccagcaaaacatcctcttcgacctcgacggcaccctgaccgacc  <  4:126362‑M1/149‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CCAGCTTGGCCAGGGCGTACTGGATCGAGCGAGTGATGCCCAGGCGTGGGTCGGTCAGGGTGCCGTCGAGGTCGAAGAGGATGTTTTGCTGGTGCATGTACAGGGTTCCACTTGAGTGCTGCGTGGCCTTCT‑TCGCGGGCATGCCCGCTCCCACAGGTAAAGCGCAGGCCTTGAAGGGGCCACTCAACCTGCGGGGGCGGGCATGCCCGCGAATGCGGTCATTCAGGTTGATCGTAGCCTTCGGCCAGGTGCTGGTCCTTGAGCTTCACGTAGTTGCCGGCGCTGTAGGAGAAAAA  >  NC_002947/100312‑100607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.