New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 222422 = | 53 (1.050) | 3 (0.060) | 3/246 | NT | 5.9% | coding (277/1020 nt) | PP_0170 | ABC transporter substrate‑binding protein |
? | NC_002947 | 222477 = | 46 (0.960) | coding (332/1020 nt) | PP_0170 | ABC transporter substrate‑binding protein |
TCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACA > NC_002947/222276‑222569 | tCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATcgcc > 5:75856/1‑149 (MQ=255) gcaggaagcgcgactgcaccgaaacacccaccgccggaacggcgatacggtctttgtcggagatgtcggcgatggtcttcacgttggggttgctgctgaccaggtagtacgggaagttgcccagcgaagccacggccttcacgttctGc < 5:215936‑M1/2‑1 (MQ=255) tgctgctgAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATcgccggcgcc > 5:75438/1‑149 (MQ=255) tgctgctgAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATcgccggcgcc > 1:37692/1‑149 (MQ=255) ctgctgAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATcgccggcgccg < 5:177707/148‑1 (MQ=255) cgcgactgcaccgaaacacccaccgccggaacggcgatacggtctttgtcggagatgtcggcgatggtcttcacgttggggttgctgctgaccaggtagtacgggaagttgcccagcgaagccacggccttcacgttctGCCGGCGCCg < 8:164737‑M1/10‑1 (MQ=255) ctgAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGgtgt < 4:276636/149‑1 (MQ=255) ctgAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGgt < 6:75856/147‑1 (MQ=255) tggtgCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCg > 4:19895/1‑149 (MQ=255) ggtgCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGc > 6:192868/1‑149 (MQ=255) cGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGAGCGCTGtt > 4:14665/1‑149 (MQ=255) tGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGa < 2:155486/149‑1 (MQ=255) aCCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGAcc < 5:192868/149‑1 (MQ=255) cTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCCGTGTCGGACCGCTGTTGACCGTCTGGGa > 7:6985/1‑149 (MQ=255) tGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGAc > 7:217222/1‑149 (MQ=255) tGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGAc > 2:4944/1‑149 (MQ=255) aaaCACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCaa < 1:134516/149‑1 (MQ=255) cGGCAAGGAGCAGGGCATCGACATCGAAGTCGAATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGAGGACATCGCCGGCGCAGGTGTCGGACCGCTGTTGaac > 1:44467/1‑126 (MQ=255) gtcggagatgtcggcgatggtcttcacgttggggttgctgctgaccaggtagtacgggaagttgcccagcgaagccacggccttcacgttctGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCa > 7:164737‑M1/93‑148 (MQ=255) gAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGa < 7:70565/108‑1 (MQ=255) gAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGa > 8:70565/1‑108 (MQ=255) gggCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGATCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGa < 4:243700/149‑1 (MQ=255) gggCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGa < 2:37692/149‑1 (MQ=255) ggCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGcc < 5:277779/136‑1 (MQ=255) ggCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGcc > 6:277779/1‑136 (MQ=255) cgacatcgaAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGc < 2:175096/130‑1 (MQ=255) cgacatcgaAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGc > 1:175096/1‑130 (MQ=255) aaGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGc < 7:194567/122‑1 (MQ=255) aaGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGc > 8:194567/1‑122 (MQ=255) gTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCt > 4:119630/1‑149 (MQ=255) cG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTgg > 8:83355/1‑149 (MQ=255) gttggggttgctgctgaccaggtagtacgggaagttgcccagcgaagccacggccttcacgttctGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGc < 2:188196‑M1/55‑1 (MQ=255) gttggggttgctgctgaccaggtagtacgggaagttgcccagcgaagccacggccttcacgttctGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGc > 1:188196‑M1/66‑120 (MQ=255) aTTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTggg > 4:196016/1‑148 (MQ=255) aTTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGc < 7:83355/149‑1 (MQ=255) gcAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTcc > 2:284032/1‑149 (MQ=255) gcAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTcc < 6:75438/149‑1 (MQ=255) gCTGTCGGGTGGCTCGGCCGTCAACGATGCTTTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGt < 3:161394/149‑1 (MQ=255) tGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGta > 8:267202/1‑148 (MQ=255) tCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGta < 7:267202/146‑1 (MQ=255) cTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTg > 2:166686/1‑106 (MQ=255) cTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTg < 1:166686/106‑1 (MQ=255) ggCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAg > 5:182103/1‑106 (MQ=255) ggCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAg < 6:182103/106‑1 (MQ=255) ggCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTcagca < 1:4944/149‑1 (MQ=255) ggCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTcag < 3:196016/147‑1 (MQ=255) gTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGc < 4:243088/78‑1 (MQ=255) gTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGc > 3:243088/1‑78 (MQ=255) tGCATTGTTGTCCGGTGCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAAc < 8:217222/148‑1 (MQ=255) aTTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTcagc < 1:151722/133‑1 (MQ=255) aTTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTcagc > 2:151722/1‑133 (MQ=255) gtCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAAc > 7:899/1‑139 (MQ=255) gtCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAAc < 8:899/139‑1 (MQ=255) gTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAg > 6:215110/1‑140 (MQ=255) gTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAg < 5:215110/140‑1 (MQ=255) gTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGcc > 7:178551/1‑149 (MQ=255) ttCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGcc > 4:214554/1‑148 (MQ=255) ggTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGCCCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCACCCCCAACGTGAAGACCCTCGCCGACa > 5:261927/1‑149 (MQ=255) ggTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGAc < 1:284032/148‑1 (MQ=255) aTCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGcc > 4:251452/1‑138 (MQ=255) aTCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGcc < 3:251452/138‑1 (MQ=255) GCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACa < 3:102995‑M1/148‑1 (MQ=255) | TCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCG‑ATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACA > NC_002947/222276‑222569 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |