New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 222422 = | 53 (1.050) | 3 (0.060) | 3/246 | NT | 5.9% | coding (277/1020 nt) | PP_0170 | ABC transporter substrate‑binding protein |
? | NC_002947 | 222477 = | 46 (0.960) | coding (332/1020 nt) | PP_0170 | ABC transporter substrate‑binding protein |
AGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCCGGCGGTGGGTGTTTCGGTGCAGTCGCGCTTCCTGC > NC_002947/222330‑222623 | gtcggagatgtcggcgatggtcttcacgttggggttgctgctgaccaggtagtacgggaagttgcccagcgaagccacggccttcacgttctGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCa > 7:164737‑M1/93‑148 (MQ=255) gggCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGATCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGa < 4:243700/149‑1 (MQ=255) gggCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGa < 2:37692/149‑1 (MQ=255) gTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCt > 4:119630/1‑149 (MQ=255) cGATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTgg > 8:83355/1‑149 (MQ=255) aTTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTggg > 4:196016/1‑148 (MQ=255) aTTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGc < 7:83355/149‑1 (MQ=255) gcAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTcc < 6:75438/149‑1 (MQ=255) gcAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTcc > 2:284032/1‑149 (MQ=255) gCTGTCGGGTGGCTCGGCCGTCAACGATGCTTTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGt < 3:161394/149‑1 (MQ=255) tGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGta > 8:267202/1‑148 (MQ=255) tCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGta < 7:267202/146‑1 (MQ=255) cTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTg < 1:166686/106‑1 (MQ=255) cTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTg > 2:166686/1‑106 (MQ=255) ggCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAg > 5:182103/1‑106 (MQ=255) ggCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAg < 6:182103/106‑1 (MQ=255) ggCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTcagca < 1:4944/149‑1 (MQ=255) ggCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTcag < 3:196016/147‑1 (MQ=255) tGCATTGTTGTCCGGTGCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAAc < 8:217222/148‑1 (MQ=255) aTTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTcagc > 2:151722/1‑133 (MQ=255) aTTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTcagc < 1:151722/133‑1 (MQ=255) gtCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAAc > 7:899/1‑139 (MQ=255) gtCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAAc < 8:899/139‑1 (MQ=255) gTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAg > 6:215110/1‑140 (MQ=255) gTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAg < 5:215110/140‑1 (MQ=255) gTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGcc > 7:178551/1‑149 (MQ=255) ttCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGcc > 4:214554/1‑148 (MQ=255) ggTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGCCCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCACCCCCAACGTGAAGACCCTCGCCGACa > 5:261927/1‑149 (MQ=255) ggTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGAc < 1:284032/148‑1 (MQ=255) aTCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGcc > 4:251452/1‑138 (MQ=255) aTCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGcc < 3:251452/138‑1 (MQ=255) tgccggcccttggtgcggtcccagacggtcaacagcggtccgacaccggcgccggcAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGAc > 7:164737‑M2/57‑148 (MQ=255) gccggcccttggtgcggtcccagacggtcaacagcggtccgacaccggcgccggcAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAAc > 1:188196‑M2/56‑120 (MQ=255) gccggcccttggtgcggtcccagacggtcaacagcggtccgacaccggcgccggcAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAAc < 2:188196‑M2/65‑1 (MQ=255) GCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACa < 3:102995‑M1/148‑1 (MQ=255) ccggTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCg > 6:215936/1‑148 (MQ=255) tCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTccc > 4:269505/1‑79 (MQ=255) tCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTccc < 3:269505/79‑1 (MQ=255) ggACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGt > 1:124583/1‑149 (MQ=255) ccGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTcc > 3:87109/1‑149 (MQ=255) cGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCcg > 7:104040/1‑149 (MQ=255) gCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCcgg < 3:119630/149‑1 (MQ=255) cTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCcggc > 2:135434/1‑149 (MQ=255) gACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGaa < 4:253942/99‑1 (MQ=255) gACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGaa > 3:253942/1‑99 (MQ=255) ccGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCCGGCggtgggt < 4:102995/149‑1 (MQ=255) cGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCCGGCggtgggtg < 8:6985/149‑1 (MQ=255) ggACCGCACCAAGGGCCGGCAGACCGTGACCGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGGCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCCGGCGGTGGGTGTTTCgg < 6:261927/149‑1 (MQ=255) gACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCCGGCGGTGGGTGTTTCGGt < 3:214554/149‑1 (MQ=255) gACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCCGGCGGTGGGTGTTTCGGt < 3:19895/149‑1 (MQ=255) gACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCCGGCGGTGGGTGTTTCGGt < 8:178551/149‑1 (MQ=255) cAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCCGGCGGTGGGTGTTTCGGTGCAGTcgc > 7:124656/1‑149 (MQ=255) cAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCCGGCGGTGGGTGTTTCGGTGCAGTcgc < 1:135434/149‑1 (MQ=255) cggcgccggcAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCCGGCGGTGGGTGTTTCGGTGCAGTcgcg < 8:164737‑M2/139‑1 (MQ=255) gggCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCg < 3:250162/113‑1 (MQ=255) gggCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCg > 4:250162/1‑113 (MQ=255) gggCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCCGGCGGTGGGTGTTTCTGTGCAGTCGCGCt < 8:104040/149‑1 (MQ=255) ggCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCCGGCGGTGGGTGTTTCGGt < 7:65727/137‑1 (MQ=255) ggCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCCGGCGGTGGGTGTTTCGGt > 8:65727/1‑137 (MQ=255) gcAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCCGGCGGTGGGTGTTTCGGTGCAGTCGCGCTTCCTGc < 5:215936‑M2/147‑1 (MQ=255) | AGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCGTCAACGATGCATTGTTGTCCGGTTCGGTGGACATCGCCGGCGCCGGTGTCGGACCGCTGTTGACCGTCTGGGACCGCACCAAGGGCCGGCAGAACGTGAAGGCCGTGGCTTCGCTGGGCAACTTCCCGTACTACCTGGTCAGCAGCAACCCCAACGTGAAGACCATCGCCGACATCTCCGACAAAGACCGTATCGCCGTTCCGGCGGTGGGTGTTTCGGTGCAGTCGCGCTTCCTGC > NC_002947/222330‑222623 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |