New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	409939 =	50 (0.990)	3 (0.060)	3/242	NT	5.6%	coding (725/2646 nt)	aceE	pyruvate dehydrogenase E1 component
	?	NC_002947	410027 =	54 (1.140)					coding (637/2646 nt)	aceE	pyruvate dehydrogenase E1 component

CCCAGACGACTTTGTTGACGTTCCAGCCACCGCCACGGAACACGCCTTCGAGTTCCTGGATGATCTTGCCGTTGCCGCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCTGGATCGG  >  NC_002947/409796‑410087                                                                                                                                                |                                                                                                                                                     cggcaactgcctgtcttcgtacccgcacccatggctgatgcctgacttctggcagttcccgaccgtttcgatgggtctgggcccgatccaggcgatctaccaggcacgcttcatgaagtacctgttagcccgtggcttcatcccggccg                                                                                                                                                 >  1:274210‑M1/144‑149 (MQ=255)   gcaacggcctgtcttcgtacccgcacccatggctgatgcctgacttctggcagttcccgaccgtttcgatgggtctgggcccgatccaggcgatctaccaggcacgcttcatgaagtacctggaagcccgtggcttcatcccggccggc                                                                                                                                               >  8:115419‑M1/142‑149 (MQ=255)     gacgacTTTGTTGACGTTCCAGCCACCGCCACGGAACACGCCTTCGAGTTCCTGGATGATCTTGCCGTTGCCGCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCa                                                                                                                                             <  4:160260/149‑1 (MQ=255)          cTTTGTTGACGTTCCAGCCACCGCCACGGAACACGCCTTCGAGTTCCTGGATGATCTTGCCGTTGCCGCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCg                                                                                                                                        <  1:38647/149‑1 (MQ=255)           tttGTTGACGTTCCAGCCACCGCCACGGAACACGCCTTCGAGTTCCTGGATGATCTTGCCGTTGCCGCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGa                                                                                                                                       >  6:256603/1‑149 (MQ=255)           tttGTTGACGTTCCAGCCACCGCCACGGAACACGCCTTCGAGTTCCTGGATGATCTTGCCGTTGCCGCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGa                                                                                                                                       >  1:170353/1‑149 (MQ=255)                tgACGTTCCAGCCACCGCCACGGAACACGCCTTCGAGTTCCTGGATGATCTTGCCGTTGCCGAGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCa                                                                                                                                  >  7:75934/1‑149 (MQ=255)                   cGTTCCAGCCACCGCCACGGAACACGCCTTCGAGTTCCTGGATGATCTTGCCGTTGCCGCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCAcc                                                                                                                                >  1:227181/1‑148 (MQ=255)                    gTTCCAGCCACCGCCACGGAACACGCCTTCGAGTTCCTGGATGATCTTGCCGTAGCCGCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCa                                                                                                                              <  6:261467/149‑1 (MQ=255)                           ccACCGCCACGGAACACGCCTTCGAGTTCCTGGATGATCTTGCCGTTGCCGCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTc                                                                                                                       >  7:189906/1‑149 (MQ=255)                                     ggAACACGCCTTCGAGTTCCTGGATGATCTTGCCGTTGCCGCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCtcgtcg                                                                                                             <  8:189906/149‑1 (MQ=255)                                     ggAACACGCCTTCGAGTTCCTGGATGATCTTGCCGTTGCCGCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCtcgtcg                                                                                                             >  5:152169/1‑149 (MQ=255)                                        acacGCCTTCGAGTTCCTGGATGATCTTGCCGTTGCCGCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCAc                                                                                                          >  7:275183/1‑149 (MQ=255)                                         cacGCCTTCGAGTTCCTGGATGATCTTGCCGTTGCCGCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCAc                                                                                                          >  5:198152/1‑148 (MQ=255)                                                   aGTTCCTGGATGATCTTGCCGTTGCCGCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGcc                                                                                               <  6:198152/149‑1 (MQ=255)                                                             tgatCTTGCCGTTGCCGCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCAc                                                                                     <  2:170353/149‑1 (MQ=255)                                                                    gccgttgccgCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCt                                                                              >  5:294546/1‑149 (MQ=255)                                                                      cgttgccgCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTc                                                                            <  6:294546/149‑1 (MQ=255)                                                                        ttgccgCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTg                                                                          <  1:121328/149‑1 (MQ=255)                                                                             gcgAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTgc                                                                     >  7:1600/1‑149 (MQ=255)                                                                             gcgAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTgc                                                                     <  2:227181/149‑1 (MQ=255)                                                                                aaCCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCAt                                                                                            >  4:93956/1‑123 (MQ=255)                                                                                aaCCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTgccgg                                                                  >  3:304710/1‑149 (MQ=255)                                                                                   ccgatccaggcgatctaccaggcacgcttcatgaagtacctggaagcccgtggcttcatccCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTgccggccg                                                               <  6:208541‑M1/88‑1 (MQ=255)                                                                                   cGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTgccggccg                                                               <  8:290689/149‑1 (MQ=255)                                                                                    cgatccaggcgatctaccaggcacgcttcatgaagtacctggaagcccgtggcttcatccCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGccggccgg                                                              >  5:208541‑M1/61‑149 (MQ=255)                                                                                     gatccaggcgatctaccaggcacgcttcatgaagtacctggaagcccgtggcttcatccCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCggg                                                             >  3:104954‑M1/60‑149 (MQ=255)                                                                                          tCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCTATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGaa                                                        <  5:285980/149‑1 (MQ=255)                                                                                          tCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGaa                                                        <  6:80686/149‑1 (MQ=255)                                                                                             aGGCGCTGCAGGTTGCAGTTGATGACTAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGAGATTTCACCAAGGGATTCCGGCTCTTCGCACTCACCGTCGCCCATGAAGAACCAGCCCTGCTGCGTGCCGGCCTGGATGAAGc                                                      >  6:246638/1‑148 (MQ=255)                                                                                             aGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGc                                                      >  6:251069/1‑148 (MQ=255)                                                                                              ggCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCa                                                    >  2:41231/1‑149 (MQ=255)                                                                                                   tGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCCGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCCTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGCCCGGGATGAAGCCACGGGc                                               >  7:80863/1‑149 (MQ=255)                                                                                                      aGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTc                                            >  5:150462/1‑149 (MQ=255)                                                                                                         ttGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCGGGACAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAg                                         <  8:80863/149‑1 (MQ=255)                                                                                                         ttGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAg                                         >  8:294019/1‑149 (MQ=255)                                                                                                           gCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCCGTGGCTTcatccc                                       <  8:75934/149‑6 (MQ=255)                                                                                                             aGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTAc                                     >  1:74106/1‑149 (MQ=255)                                                                                                                 gatgaCGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTc                                  <  5:256603/148‑1 (MQ=255)                                                                                                                  atgaCGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCa                                 <  4:314975/148‑1 (MQ=255)                                                                                                                  atgaCGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCa                                 <  7:294019/148‑1 (MQ=255)                                                                                                                       gAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGc                           >  5:183034/1‑149 (MQ=255)                                                                                                                         aGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGt                         >  7:92530/1‑149 (MQ=255)                                                                                                                         aGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGt                         <  1:41231/149‑1 (MQ=255)                                                                                                                            tCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGGCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGcc                      <  4:204485/149‑1 (MQ=255)                                                                                                                              aGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCt                     <  6:150462/148‑1 (MQ=255)                                                                                                                                gTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACgg                                                 >  6:240825/1‑118 (MQ=255)                                                                                                                                gTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACgg                                                 <  5:240825/118‑1 (MQ=255)                                                                                                                                gTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGt                  <  8:275183/149‑1 (MQ=255)                                                                                                                                       aGCTTCCCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGc           >  1:317144/1‑149 (MQ=255)                                                                                                                                         cTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCt         >  1:169710/1‑149 (MQ=255)                                                                                                                                         cTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCt         <  6:152169/149‑1 (MQ=255)                                                                                                                                         cTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCt         <  2:169710/149‑1 (MQ=255)                                                                                                                                          ttCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCTg        >  4:109782/1‑149 (MQ=255)                                                                                                                                          ttCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCTg        >  4:105168/1‑149 (MQ=255)                                                                                                                                                CGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCTGGATCgg  >  8:92530‑M1/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     CCCAGACGACTTTGTTGACGTTCCAGCCACCGCCACGGAACACGCCTTCGAGTTCCTGGATGATCTTGCCGTTGCCGCGAACCGGGCCGTCGAGGCGCTGCAGGTTGCAGTTGATGACGAAGATCAGGTTGTCCAGCTTCTCGCGGCCGGCCAGGGCGATTGCACCCAGGGATTCCGGCTCGTCGCACTCACCGTCGCCCATGAAGCACCAGACCTTCTGCTTGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCTGGATCGG  >  NC_002947/409796‑410087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.