New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 643149	41 (0.810)	4 (0.080)	4/250	NT	8.3%	coding (857/1023 nt)	acoB	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit beta
	?	NC_002947	= 643188	49 (1.000)					coding (818/1023 nt)	acoB	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit beta

GGCTTCGATCACCTTGCGCACGGCGGCTTCGATCTTCGCCGCGTCAGGGATGTACAGGTCTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAGAATGCTGTCCTCGTCCAGCGGGCTGGTAGTGCGCAGGTCCAGCACTTCGCAGTCGAT  >  NC_002947/643001‑643294                                                                                                                                                     |                                                                                                                                                  ggCTTCGATCACCTTGCGCACGGCGGCTTCGATCTTCGCCGCGTCAGGGATGTACAGGTCTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCA                                                                                                                                                   >  1:222075‑M1/1‑149 (MQ=255) ggCTTCGATCACCTTGCGCACGGCGGCTTCGATCTTCGCCGCGTCAGGGATGTACAGGTCTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCA                                                                                                                                                   >  7:147782‑M1/1‑149 (MQ=255)       gATCACCTTGCGCACGGCGGCTTCGATCATCGCCGCGTCAGGGATGTACAGGTCTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCAacccgc                                                                                                                                             >  2:9432‑M1/1‑143 (MQ=255)            ccTTGCGCACGGCGGCTTCGATCTTCGCCGCGTCAGGGATGTACAGGTCTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTg                                                                                                                                        <  8:147782/149‑1 (MQ=255)            ccTTGCGCACGGCGGCTTCGATCTTAGACGCGTCAGGGATGTACAGGTCTTCCAGGCCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCt                                                                                                                                         >  1:141951/1‑148 (MQ=255)                     cggcggCTTCGATCTTCGCGGCGTCAGGGATGTACAGGTCTTCCAGGTCGTCGGAGAACGGGACCGGGGTATTCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTg                                                                                                                               <  1:15745/149‑1 (MQ=255)                            ttagATCTTCGCCGCGTCAGGGATGTACAGGTCTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATc                                                                                                                         >  2:78546/4‑148 (MQ=255)                              cGATCTTCGCCGCGTCAGGGATGTACAGGTCTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCACGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCg                                                                                                                        <  6:136353/147‑1 (MQ=255)                               gATCTTCGCCGCGTCAGGGATGTACAGGTCTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCATTCTGTGCCACCAGCGCGCTGATTTCGTTGGCCATCGag                                                                                                                      >  2:121230/1‑148 (MQ=255)                                            tCAGGGATGTACAGGTCTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCTCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTtggc                                                                                                        >  7:111250‑M2/1‑145 (MQ=255)                                              aGGGATGTACAGGTCTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCAacccgcgctgctcgatggccaccgacatcagcgcgctggtggcac                                                                                                      <  1:9432‑M1/149‑46 (MQ=255)                                                  aTGTACAGGTCTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATc                                                                                                  >  5:148300/1‑149 (MQ=255)                                                     tACAGGTCTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGAt                                                                                               <  6:148300/149‑1 (MQ=255)                                                       cAGGTCTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATc                                                                                              <  2:106975/148‑1 (MQ=255)                                                        aGGGCTTCCAGGGCGTCGGAGAACGGCCCCGGGGGATGCGGCGCGGTGACCCTTTCTAGCGGGCCCTGGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCTCAGCTGTCGGTGGCCCGCGCGCCGCGCGGGGTGGCTTCAGCGagaac                                                                                            >  4:301621/1‑145 (MQ=255)                                                            cTTGCAGGGCGTGGGAGTACGGCACCGGGGTATGCGTCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCGTTCTGTGCCAacccgcgctgctcgatggacaccgacatcagcgcgctgg                                                                                                            <  8:258692‑M1/129‑40 (MQ=255)                                                            cTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCAacccgcgctgctcgatggccaccgacatcagcgcgctgg                                                                                                            >  7:258692‑M1/1‑90 (MQ=255)                                                            cTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATcaccac                                                                                         >  8:78893/1‑148 (MQ=255)                                                             ttCCAGGGCGTCGGAGATCGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATcaccac                                                                                         >  2:26646/1‑147 (MQ=255)                                                                   ggCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAggcggc                                                                                 >  8:233207/1‑149 (MQ=255)                                                                     cGTCGGAGAACGGCACCGGGGTATGCGGGGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGTTTGGCTTCATCGATCACAACCAGGCGGCCg                                                                               <  2:141951/149‑1 (MQ=255)                                                                       tCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGt                                                                             >  7:32507/1‑149 (MQ=255)                                                                          gagaACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGtctt                                                                          >  6:7458/1‑149 (MQ=255)                                                                             aaCGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAggcggc                                                                                 >  6:291050/1‑139 (MQ=255)                                                                             aaCGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAggcggc                                                                                 <  5:291050/139‑1 (MQ=255)                                                                               cGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGTCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGTTTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCca                                                                     <  1:121230/149‑1 (MQ=255)                                                                               cGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCca                                                                     >  3:182467/1‑149 (MQ=255)                                                                               cGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCca                                                                     <  4:189076/149‑1 (MQ=255)                                                                                ggCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCca                                                                     >  7:124208/1‑148 (MQ=255)                                                                                     cGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACttt                                                               >  5:108975/1‑149 (MQ=255)                                                                                     cGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACttt                                                               <  6:108975/149‑1 (MQ=255)                                                                                     cGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACttt                                                               <  5:7458/149‑1 (MQ=255)                                                                                         gTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAg                                                           <  5:117266/149‑1 (MQ=255)                                                                                              cggcgCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAGAATg                                                       <  7:233207/148‑1 (MQ=255)                                                                                                gcgcGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACttt                                                               >  6:26078/1‑138 (MQ=255)                                                                                                gcgcGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACttt                                                               <  5:26078/138‑1 (MQ=255)                                                                                                         ccATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAGAATGCTGTCCTCGTc                                            <  4:182467/148‑1 (MQ=255)                                                                                                           aTTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAGAATGCTGTCCTCGTCCAg                                         >  4:301394/1‑149 (MQ=255)                                                                                                             ttCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAGAATGCTGTCCTCGTCCAGCg                                       >  3:312053/1‑149 (MQ=255)                                                                                                              tagATCGGGCCCGTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATTTCGGTGGCCATCGAGCAGCGCGGGGTGGCTTCATCGATCACCCCCAGGCGGCCGGGCTTGTCCACACTTTGCAGAATGCTGTCCTCGTCCAGCgg                                      >  6:298782/3‑149 (MQ=255)                                                                                                                gATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAGAATGCTGTCCTCGTCCAGCggg                                     <  5:58221/148‑1 (MQ=255)                                                                                                                gATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAGAATGCTGTCCTCGTCCAGCGGGc                                    >  5:287965/1‑149 (MQ=255)                                                                                                                 aTCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAGAATGCTGTcc                                                 >  3:128186/1‑135 (MQ=255)                                                                                                                 aTCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAGAATGCTGTcc                                                 <  4:128186/135‑1 (MQ=255)                                                                                                                        ccTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAGAATGCTGTCCTCGTCCAGCGGGCTGGTAGTg                            <  1:78546/149‑1 (MQ=255)                                                                                                                             cgTGCGCCCACCGCCTGCTGTGCCACCATCGCGCTGAGGGCGGTGGCCCTCGCGCCGCGCGGGGTGGCTGCATCGATCCCCACCAGGCGTCCGGTCTGCTCCACACTTTCCAGAATGCTGTCCTCGTCCAGCGGGCGGGTAGTGCGCAg                       <  3:301621/148‑1 (MQ=255)                                                                                                                              gTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAGAATGCTGTCCTCGTCCAGCGGGCTGGTAGTGCGCAg                       <  3:86122/148‑1 (MQ=255)                                                                                                                                          ccTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCTTCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAGAATGCTGTCCTCGTCCAGCGGGCTGGTAGTGCGCAGGTCCAGCACTTCg          <  2:222075/149‑1 (MQ=255)                                                                                                                                                gtgCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTtggcacagaaggcttttggcgcactcaagggcccgatcgaaatggtcaccgcgccgcataccccggtgccgttctccgacgccctggaagacctgtacatccct    <  1:9432‑M2/149‑105 (MQ=255)                                                                                                                                                  gCCAacccgcgctgctcgatggccaccgacatcagcgcgctggtggcacagaaggcttttggcgcactcaagggcccgatcgaaatggtcaccgagccgcataccccggtgccgttctccgacgccctggaagacctgtacatccctga  >  7:111250‑M1/1‑4 (MQ=255)                                                                                                                                                   ccaccaGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAGAATGCTGTCCTCGt                                             <  4:73711/105‑1 (MQ=255)                                                                                                                                                   ccaccaGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAGAATGCTGTCCTCGt                                             >  3:73711/1‑105 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GGCTTCGATCACCTTGCGCACGGCGGCTTCGATCTTCGCCGCGTCAGGGATGTACAGGTCTTCCAGGGCGTCGGAGAACGGCACCGGGGTATGCGGCGCGGTGACCATTTCGATCGGGCCCTTGAGTGCGCCAAAAGCCTTCTGTGCCACCAGCGCGCTGATGTCGGTGGCCATCGAGCAGCGCGGGTTGGCTTCATCGATCACCACCAGGCGGCCGGTCTTCTCCACACTTTCCAGAATGCTGTCCTCGTCCAGCGGGCTGGTAGTGCGCAGGTCCAGCACTTCGCAGTCGAT  >  NC_002947/643001‑643294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.