New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 750249	44 (0.870)	3 (0.060)	3/242	NT	6.3%	coding (615/1185 nt)	PP_0640	hypothetical protein
	?	NC_002947	= 750274	48 (1.020)					coding (590/1185 nt)	PP_0640	hypothetical protein

TTGTGAGAAACTCAAATCCCTTTTCTCTTACAGCTAGAGCAAATCCTACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTAACAGCAAG  >  NC_002947/750101‑750394                                                                                                                                                     |                                                                                                                                                    ttGTGAGAAAATCAAATCCCTTTTCTCTTACAGCTAGAGCAAATCCTACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCTCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCC                                                                                                                                                     >  2:16131‑M1/1‑149 (MQ=255)     gacaaaCTCAAATCCCTTTTCTATTACAGCTAGAGCAAATCCTACAAATCATGGCAATTCATGGTTAGAGACTTGTGTGGTTAAAACGTCATCGCAAAGGAATCCTATCTCGGCAAAAAACACTAGAAGCATGTTATTGAATTCCttt                                                                                                                                                  >  4:107127/4‑148 (MQ=255)      agaAACTCAAATCCCTTTTCTCTTACAGCTAGAGCAAATCCTACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTc                                                                                                                                                 <  6:89835/148‑1 (MQ=255)          attaaaaTCTCTTTTCTCTTAAAGCTATAGAAAATACTAAAAATCCTGGCATTTGATGGTTTGAGAATTGTGTGGTTAAAACGTCATCTCAAAGGTATCATATCTCGGCAAAATACTCTAGTAGCATGTTTTTGTATTCCTTTCCAAAc                                                                                                                                            <  8:228264/145‑1 (MQ=255)                     ttttCTCTTACAGCTAGAGCAAATCCTACAAATCCTGGCATTTGATGGTTTGCGACTGATGTGATTAAAAAGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGt                                                                                                                                 >  5:231668/1‑149 (MQ=255)                            ttACACCTAGAGCAAATCCTACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAAAGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATg                                                                                                                         <  6:134825‑M2/148‑2 (MQ=255)                                    agagCAAATCCTACAAATCCTGGCAGTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGAAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATg                                                                                                                <  8:20044/149‑1 (MQ=255)                                      agCAAATCCTACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGc                                                                                                              >  2:281603/1‑149 (MQ=255)                                         aaaTCCTACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCatgcaaccattgaaaggtttggaaaggaatacaaaaacat                                                                                                             <  3:70426‑M1/149‑41 (MQ=255)                                           aTCCTACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGTCAAAATCCTCTAGTAGCATGTTTTTGTATTCCatgcaaccattgaaaggtttggaaaggaatacaaaaacatgc                                                                                                           <  4:198405‑M1/149‑43 (MQ=255)                                           aTCCTACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCa                                                                                                                           >  6:8723/1‑131 (MQ=255)                                           aTCCTACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCa                                                                                                                           <  5:8723/131‑1 (MQ=255)                                               tACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTg                                                                                                      >  2:155284/1‑148 (MQ=255)                                                aCAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAATTCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGt                                                                                                     >  7:135831/1‑148 (MQ=255)                                                 cAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAATGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCa                                                                                                   <  6:231668/149‑1 (MQ=255)                                                 cAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTc                                                                                                    <  1:155284/148‑1 (MQ=255)                                                 cAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCa                                                                                                   <  5:113420/149‑1 (MQ=255)                                                  aaaTCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAg                                                                                                  >  4:204022/1‑149 (MQ=255)                                                  aaaTCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAg                                                                                                  >  5:284558/1‑149 (MQ=255)                                                   aaTCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGc                                                                                                 <  7:98504/149‑1 (MQ=255)                                                   aaTCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCATGC‑‑AACCATTGAAAGGTTTGGAAAggaatacaaaaacatgctactagag                                                                                                 >  2:104080‑M2/1‑124 (MQ=255)                                                    aTCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACAtt                                                                                                       >  3:37097/1‑142 (MQ=255)                                                    aTCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACAtt                                                                                                       <  4:37097/142‑1 (MQ=255)                                                    aTCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCt                                                                                                <  3:107127/149‑1 (MQ=255)                                                             tttGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCt                                                                                        >  2:187125/1‑148 (MQ=255)                                                                    gTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATAtt                                                                                  >  3:183447/1‑147 (MQ=255)                                                                     tttGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAg                                                                               <  1:187125/149‑1 (MQ=255)                                                                          gACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGcc                                                                                                             >  8:157104/1‑114 (MQ=255)                                                                          gACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGcc                                                                                                             <  7:157104/114‑1 (MQ=255)                                                                            cTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTc                                                                                                                                       <  2:33456/88‑1 (MQ=255)                                                                                tgtgGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAAtct                                                                    >  2:313057/1‑149 (MQ=255)                                                                                    gTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCATCATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGc                                                                >  5:96450/1‑149 (MQ=255)                                                                                    gTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGc                                                                >  3:104724/1‑149 (MQ=255)                                                                                         aaCGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAAtta                                                                                           <  3:5386/117‑2 (MQ=255)                                                                                         aaCGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTc                                                                                           >  4:5386/1‑117 (MQ=255)                                                                                           cGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTgg                                                         <  1:313057/149‑1 (MQ=255)                                                                                            gTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGa                                                        <  5:134825/149‑1 (MQ=255)                                                                                                           tCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCTCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAgtg                                         >  8:147338/1‑149 (MQ=255)                                                                                                             cTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAgtgt                                        <  3:204022/148‑1 (MQ=255)                                                                                                             cTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTc                                       >  3:145877/1‑149 (MQ=255)                                                                                                             cTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCATTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTc                                       <  4:145877/149‑1 (MQ=255)                                                                                                                    ggCAAAATACTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATTGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGATGTTTGCGGAAAGTGTCGAttt                                  <  1:16131/147‑1 (MQ=255)                                                                                                                     gCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGc                                >  4:19749/1‑148 (MQ=255)                                                                                                                           tCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTc                         <  8:52713/149‑1 (MQ=255)                                                                                                                             ctctAGTAGCATGTTTTTGTATTCCtttccaaacctttcaatggttgcatggaatacaaaaacatgctactagaggattttgccgagataggatacctttgcgatgacgttttaaccacacaagtcgcaaaccatcaaatgccaggatt                         >  2:104080‑M1/1‑25 (MQ=255)                                                                                                                              tctAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAg                                           <  7:46616/128‑1 (MQ=255)                                                                                                                                     gCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATggaatacaaaaacatgctactagaggattttgacgagataggatacctttgcgatgacgttttaaccacacaagtcgcaaaccatcaaatgccaggatttgtaggat               <  4:198405‑M2/149‑108 (MQ=255)                                                                                                                                       aTGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATggaatacaaaaacatgctactagaggattttgccgagataggatacctttgcgatgacgttttaaccacacaagtcgcaaaccatcaaatgccaggatttgtaggattt             <  3:70426‑M2/149‑110 (MQ=255)                                                                                                                                       aTGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCg             <  8:135831/149‑1 (MQ=255)                                                                                                                                        tGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCgg            <  6:284558/149‑1 (MQ=255)                                                                                                                                          tttttGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACAATGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGt           >  1:84694/1‑148 (MQ=255)                                                                                                                                            tttGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTaa         >  1:291689/1‑148 (MQ=255)                                                                                                                                               gTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCaaa                            >  4:210569/1‑126 (MQ=255)                                                                                                                                               gTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCaaa                            <  3:210569/126‑1 (MQ=255)                                                                                                                                                 aTTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTAACAGc     >  5:298118/1‑147 (MQ=255)                                                                                                                                                     catgcaaccattgaaaggtttggaaaggaatacaaaaacatgctactagaggattttgccgagataggatacctttgcgatgactttttaaccacacaagtcgcaaaccatcaaatgccaggatttgtaggatttgctctaggtgtaa  <  6:134825‑M1/148‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TTGTGAGAAACTCAAATCCCTTTTCTCTTACAGCTAGAGCAAATCCTACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTAACAGCAAG  >  NC_002947/750101‑750394

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.