New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 750249	44 (0.870)	3 (0.060)	3/242	NT	6.3%	coding (615/1185 nt)	PP_0640	hypothetical protein
	?	NC_002947	= 750274	48 (1.020)					coding (590/1185 nt)	PP_0640	hypothetical protein

TTACAGCTAGAGCAAATCCTACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTAACAGCAAGCCGTAACGCCCCAGTTGTACATGTG  >  NC_002947/750128‑750419                                                                                                                                                     |                                                                                                                                                  ttACACCTAGAGCAAATCCTACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAAAGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATg                                                                                                                                                  <  6:134825‑M2/148‑2 (MQ=255)         agagCAAATCCTACAAATCCTGGCAGTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGAAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATg                                                                                                                                         <  8:20044/149‑1 (MQ=255)           agCAAATCCTACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGc                                                                                                                                       >  2:281603/1‑149 (MQ=255)                    tACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTg                                                                                                                               >  2:155284/1‑148 (MQ=255)                     aCAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAATTCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGt                                                                                                                              >  7:135831/1‑148 (MQ=255)                      cAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAATGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCa                                                                                                                            <  6:231668/149‑1 (MQ=255)                      cAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTc                                                                                                                             <  1:155284/148‑1 (MQ=255)                      cAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCa                                                                                                                            <  5:113420/149‑1 (MQ=255)                       aaaTCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAg                                                                                                                           >  4:204022/1‑149 (MQ=255)                       aaaTCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAg                                                                                                                           >  5:284558/1‑149 (MQ=255)                        aaTCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGc                                                                                                                          <  7:98504/149‑1 (MQ=255)                        aaTCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCATGC‑‑AACCATTGAAAGGTTTGGAAAggaatacaaaaacatgctactagag                                                                                                                          >  2:104080‑M2/1‑124 (MQ=255)                         aTCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACAtt                                                                                                                                <  4:37097/142‑1 (MQ=255)                         aTCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACAtt                                                                                                                                >  3:37097/1‑142 (MQ=255)                         aTCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCt                                                                                                                         <  3:107127/149‑1 (MQ=255)                                  tttGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCt                                                                                                                 >  2:187125/1‑148 (MQ=255)                                         gTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATAtt                                                                                                           >  3:183447/1‑147 (MQ=255)                                          tttGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAg                                                                                                        <  1:187125/149‑1 (MQ=255)                                               gACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGcc                                                                                                                                      <  7:157104/114‑1 (MQ=255)                                               gACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGcc                                                                                                                                      >  8:157104/1‑114 (MQ=255)                                                     tgtgGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAAtct                                                                                             >  2:313057/1‑149 (MQ=255)                                                         gTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCATCATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGc                                                                                         >  5:96450/1‑149 (MQ=255)                                                         gTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGc                                                                                         >  3:104724/1‑149 (MQ=255)                                                              aaCGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAAtta                                                                                                                    <  3:5386/117‑2 (MQ=255)                                                              aaCGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTc                                                                                                                    >  4:5386/1‑117 (MQ=255)                                                                cGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTgg                                                                                  <  1:313057/149‑1 (MQ=255)                                                                 gTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGa                                                                                 <  5:134825/149‑1 (MQ=255)                                                                                tCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCTCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAgtg                                                                  >  8:147338/1‑149 (MQ=255)                                                                                  cTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAgtgt                                                                 <  3:204022/148‑1 (MQ=255)                                                                                  cTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTc                                                                >  3:145877/1‑149 (MQ=255)                                                                                  cTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCATTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTc                                                                <  4:145877/149‑1 (MQ=255)                                                                                         ggCAAAATACTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATTGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGATGTTTGCGGAAAGTGTCGAttt                                                           <  1:16131/147‑1 (MQ=255)                                                                                          gCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGc                                                         >  4:19749/1‑148 (MQ=255)                                                                                                tCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTc                                                  <  8:52713/149‑1 (MQ=255)                                                                                                   tctAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAg                                                                    <  7:46616/128‑1 (MQ=255)                                                                                                          gCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATggaatacaaaaacatgctactagaggattttgacgagataggatacctttgcgatgacgttttaaccacacaagtcgcaaaccatcaaatgccaggatttgtaggat                                        <  4:198405‑M2/149‑108 (MQ=255)                                                                                                            aTGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATggaatacaaaaacatgctactagaggattttgccgagataggatacctttgcgatgacgttttaaccacacaagtcgcaaaccatcaaatgccaggatttgtaggattt                                      <  3:70426‑M2/149‑110 (MQ=255)                                                                                                            aTGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCg                                      <  8:135831/149‑1 (MQ=255)                                                                                                             tGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCgg                                     <  6:284558/149‑1 (MQ=255)                                                                                                               tttttGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACAATGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGt                                    >  1:84694/1‑148 (MQ=255)                                                                                                                 tttGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTaa                                  >  1:291689/1‑148 (MQ=255)                                                                                                                    gTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCaaa                                                     >  4:210569/1‑126 (MQ=255)                                                                                                                    gTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCaaa                                                     <  3:210569/126‑1 (MQ=255)                                                                                                                      aTTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTAACAGc                              >  5:298118/1‑147 (MQ=255)                                                                                                                             tCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTAACAGCAAGCCGTa                      <  3:19749/148‑1 (MQ=255)                                                                                                                                 aaCCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTAACAGCAAGCCGTAACGcc                 >  7:211023/1‑149 (MQ=255)                                                                                                                                        cAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAgt                                                                   <  1:231993/92‑1 (MQ=255)                                                                                                                                        cAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAgt                                                                   >  2:231993/1‑92 (MQ=255)                                                                                                                                        cAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTAACAGCAAGCCGTAACGCCCCAGtt           <  4:183447/148‑1 (MQ=255)                                                                                                                                        cAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTAACAGCAAGCCGTAACGCCCCAGTTg          >  6:313259/1‑149 (MQ=255)                                                                                                                                         aaTGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTAACAGCAAGCCGTAACGCCCCAGTTg          >  4:141802/1‑148 (MQ=255)                                                                                                                                             gTT‑‑TCATGGATTACATGTCCAACATTGTCAGCTATTTCGCTTATATTTAGTTCGTCAATCTCGGCTGATTGGAGGTTTGGGGTAAGTGTCGATTTGCCATAGTCTGATCCAAAGCGGTAACAGCAAGCCGTAACGGCCCAGTTGTACa      <  2:84694/148‑1 (MQ=255)                                                                                                                                             gTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTTGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTaa                                  <  1:317241/120‑1 (MQ=255)                                                                                                                                             gTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGaaa                                  >  2:317241/1‑120 (MQ=255)                                                                                                                                              tt‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTAACAGCAAGCCGTAACGCCCCAGTTGTACAt     <  1:281603/148‑1 (MQ=255)                                                                                                                                              tt‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTAACAGCAAGCCGTAACGCCCCAGTTGTACAt     <  8:211023/148‑1 (MQ=255)                                                                                                                                                  gCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTAACAGCAAGCCGTAACGCCCCAGTTGTACAtgtg  >  7:178289/1‑149 (MQ=255)                                                                                                                                                  gCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTAACAGCAAGCCGTAACGCCCCAGTTGTACAtgt   <  7:147338/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  TTACAGCTAGAGCAAATCCTACAAATCCTGGCATTTGATGGTTTGCGACTTGTGTGGTTAAAACGTCATCGCAAAGGTATCCTATCTCGGCAAAATCCTCTAGTAGCATGTTTTTGTATTCCTTTCCAAACCTTTCAATGGTT‑‑GCATGGAATACATGGCCAACATTGTCAGCTAATTCGCTTATATTTAGTTCGGCAATCTCGGCTGATTGGAGGTTTGCGGAAAGTGTCGATTTGCCAAAGTCTGATCCAAAGCGGTAACAGCAAGCCGTAACGCCCCAGTTGTACATGTG  >  NC_002947/750128‑750419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.