New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1650786 = | 47 (0.930) | 3 (0.060) | 3/248 | NT | 5.8% | coding (274/2043 nt) | PP_1446 | TonB‑dependent receptor |
? | NC_002947 | 1650821 = | 52 (1.070) | coding (239/2043 nt) | PP_1446 | TonB‑dependent receptor |
ATGGCGTTGCCGCCGTAAAGCAGGGCGGCCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCG > NC_002947/1650638‑1650931 | tcatcaccgccaacccgctgggtaaccgccaactggccgcccccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggc > 8:94597‑M1/149‑149 (MQ=255) aTGGCGTTGCCGCCGTAAAGCAGGGCGGCCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTc < 1:172634/149‑1 (MQ=255) catcaccgccaacccgctgggtaaccgccaactggccgcccccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggcg < 1:203494‑M1/2‑1 (MQ=255) atcaccgccaacccgctgggtaaccgccaactggccgcccccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggcgc > 2:51260‑M1/147‑149 (MQ=255) tcaccgccaacccgctgggtaaccgccaactggccgcccccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggcgc < 7:74444‑M1/3‑1 (MQ=255) gccgccGTAAAGCAGGGCGGCCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATcc < 7:215757/148‑1 (MQ=255) gTAAAGCAGGGCGGCCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCcgc > 5:135644/1‑149 (MQ=255) cAGGGCGGCCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCa > 6:115186/1‑149 (MQ=255) aGGGCGGCCGGGCCACGGACGATTTCGACGCGGTCGTCGGTTACCGGGTCGAGCGGCTCGGCTTGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGTCGCCATTGCGCAGGATACGATTGCGGTCGCCATCCAGGCCGCGGATGAc < 4:241473/149‑1 (MQ=255) cggcCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCggg < 8:300665/149‑1 (MQ=255) cggcCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCggg < 5:57441/149‑1 (MQ=255) gccgcccccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggCGCCATCCAGGCCGCGGATCACCGGGCGGCTGgcgc > 3:112561‑M1/114‑149 (MQ=255) cGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGcc < 2:172153/149‑1 (MQ=255) gATTTGGACGCGCTCGTCGGTTACCGGGTCCTGCGGCACGGCATGATCGTAGGACAGGGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGc < 1:5095/149‑1 (MQ=255) cGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGTCAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGaa < 6:111996/148‑1 (MQ=255) gACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCATGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCTGGCGGCTGGCGCCAGGGCCGAAcg < 7:46408/149‑2 (MQ=255) gACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAAcc > 8:74444/1‑149 (MQ=255) tCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGgc < 2:178574/128‑1 (MQ=255) tCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGgc > 1:178574/1‑128 (MQ=255) gACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTagag < 3:122677/148‑1 (MQ=255) gACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTagag < 5:115186/148‑1 (MQ=255) gACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAgg < 5:309445/149‑1 (MQ=255) ggTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGa < 3:158015/149‑1 (MQ=255) ggTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCa < 2:4924/130‑1 (MQ=255) ggTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCa > 1:4924/1‑130 (MQ=255) ggTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGgc < 6:135644/149‑1 (MQ=255) tCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGgctg > 3:12908/1‑149 (MQ=255) ggcaTGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAgg < 3:148173/148‑1 (MQ=255) ggcaTGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAgg > 4:148173/1‑148 (MQ=255) cacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAggg < 1:112075‑M1/41‑1 (MQ=255) cacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAggg > 2:112075‑M1/66‑106 (MQ=255) gATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCa < 8:37459/112‑1 (MQ=255) gATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCa > 7:37459/1‑112 (MQ=255) gTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCAccc < 3:295159/148‑1 (MQ=255) cgacgaGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGt > 3:283291/1‑149 (MQ=255) acgaGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGtgc < 4:12908/149‑1 (MQ=255) gaGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCg < 1:321337/90‑1 (MQ=255) gaGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCg > 2:321337/1‑90 (MQ=255) gaGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGtgctg > 1:51893/1‑149 (MQ=255) gCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGctgctg > 7:302753/1‑149 (MQ=255) tCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTg > 2:83095/1‑149 (MQ=255) cAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTgca < 4:283291/149‑1 (MQ=255) cAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCG‑CAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTgca < 4:157661/148‑1 (MQ=255) aGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTgcag > 4:256398/1‑149 (MQ=255) gCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGcagcag > 2:63074/1‑149 (MQ=255) cACCGACGCCATTGCGCAGGCTACGACTGCGCTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAgg < 8:273528/149‑1 (MQ=255) cACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCGGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAgg < 4:160642/149‑1 (MQ=255) cGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCg < 1:83095/149‑1 (MQ=255) ttGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTc < 3:256398/149‑1 (MQ=255) cgcAGGATAGGAATGCGGTCGCCATCAAGGCCGCGGATCACCGGGCTGCTGGCGCCAGGGCCTAACCAGGTAGAGGCGACACCGGTCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGctgctg < 3:252243/125‑1 (MQ=255) cgcAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAAACAGGTTCAGGCGACACCGGGCTGCTTCTTAAGGGTTTCACCAAGGCTGACGTGctcctg > 4:252243/1‑125 (MQ=255) gATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACgg > 7:12163/1‑149 (MQ=255) aCGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCg < 7:199994/133‑1 (MQ=255) aCGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCg > 8:199994/1‑133 (MQ=255) gAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTg > 5:220287/1‑149 (MQ=255) cGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTgctgct > 2:151815/1‑109 (MQ=255) cGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTgctgct < 1:151815/109‑1 (MQ=255) ggTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGggcg > 3:128108/1‑149 (MQ=255) ggTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGACGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGggcg > 1:209856/1‑149 (MQ=255) gTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCg > 6:126340/1‑130 (MQ=255) gTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCg < 5:126340/130‑1 (MQ=255) | ATGGCGTTGCCGCCGTAAAGCAGGGCGGCCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCG > NC_002947/1650638‑1650931 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |