New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1650786 =47 (0.930)3 (0.060) 3/248 NT 5.8% coding (274/2043 nt) PP_1446 TonB‑dependent receptor
?NC_002947 1650821 = 52 (1.070)coding (239/2043 nt) PP_1446 TonB‑dependent receptor

ATGGCGTTGCCGCCGTAAAGCAGGGCGGCCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCG  >  NC_002947/1650638‑1650931
                                                                                                                                                    |                                                                                                                                                 
tcatcaccgccaacccgctgggtaaccgccaactggccgcccccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggc                                                                                                                                                   >  8:94597‑M1/149‑149 (MQ=255)
aTGGCGTTGCCGCCGTAAAGCAGGGCGGCCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTc                                                                                                                                                   <  1:172634/149‑1 (MQ=255)
 catcaccgccaacccgctgggtaaccgccaactggccgcccccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggcg                                                                                                                                                  <  1:203494‑M1/2‑1 (MQ=255)
  atcaccgccaacccgctgggtaaccgccaactggccgcccccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggcgc                                                                                                                                                 >  2:51260‑M1/147‑149 (MQ=255)
   tcaccgccaacccgctgggtaaccgccaactggccgcccccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggcgc                                                                                                                                                 <  7:74444‑M1/3‑1 (MQ=255)
        gccgccGTAAAGCAGGGCGGCCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATcc                                                                                                                                            <  7:215757/148‑1 (MQ=255)
              gTAAAGCAGGGCGGCCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCcgc                                                                                                                                     >  5:135644/1‑149 (MQ=255)
                    cAGGGCGGCCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCa                                                                                                                               >  6:115186/1‑149 (MQ=255)
                     aGGGCGGCCGGGCCACGGACGATTTCGACGCGGTCGTCGGTTACCGGGTCGAGCGGCTCGGCTTGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGTCGCCATTGCGCAGGATACGATTGCGGTCGCCATCCAGGCCGCGGATGAc                                                                                                                              <  4:241473/149‑1 (MQ=255)
                         cggcCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCggg                                                                                                                          <  8:300665/149‑1 (MQ=255)
                         cggcCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCggg                                                                                                                          <  5:57441/149‑1 (MQ=255)
                                   gccgcccccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggCGCCATCCAGGCCGCGGATCACCGGGCGGCTGgcgc                                                                                                                >  3:112561‑M1/114‑149 (MQ=255)
                                    cGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGcc                                                                                                               <  2:172153/149‑1 (MQ=255)
                                         gATTTGGACGCGCTCGTCGGTTACCGGGTCCTGCGGCACGGCATGATCGTAGGACAGGGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGc                                                                                                          <  1:5095/149‑1 (MQ=255)
                                              cGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGTCAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGaa                                                                                                      <  6:111996/148‑1 (MQ=255)
                                               gACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCATGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCTGGCGGCTGGCGCCAGGGCCGAAcg                                                                                                    <  7:46408/149‑2 (MQ=255)
                                               gACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAAcc                                                                                                    >  8:74444/1‑149 (MQ=255)
                                                      tCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGgc                                                                                                                  <  2:178574/128‑1 (MQ=255)
                                                      tCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGgc                                                                                                                  >  1:178574/1‑128 (MQ=255)
                                                        gACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTagag                                                                                            <  3:122677/148‑1 (MQ=255)
                                                        gACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTagag                                                                                            <  5:115186/148‑1 (MQ=255)
                                                        gACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAgg                                                                                           <  5:309445/149‑1 (MQ=255)
                                                           ggTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGa                                                                                        <  3:158015/149‑1 (MQ=255)
                                                                   ggTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCa                                                                                                   <  2:4924/130‑1 (MQ=255)
                                                                   ggTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCa                                                                                                   >  1:4924/1‑130 (MQ=255)
                                                                   ggTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGgc                                                                                <  6:135644/149‑1 (MQ=255)
                                                                     tCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGgctg                                                                              >  3:12908/1‑149 (MQ=255)
                                                                                ggcaTGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAgg                                                                    <  3:148173/148‑1 (MQ=255)
                                                                                ggcaTGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAgg                                                                    >  4:148173/1‑148 (MQ=255)
                                                                                   cacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAggg                                                                                                           <  1:112075‑M1/41‑1 (MQ=255)
                                                                                   cacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAggg                                                                                                           >  2:112075‑M1/66‑106 (MQ=255)
                                                                                     gATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCa                                                                                                   <  8:37459/112‑1 (MQ=255)
                                                                                     gATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCa                                                                                                   >  7:37459/1‑112 (MQ=255)
                                                                                         gTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCAccc                                                           <  3:295159/148‑1 (MQ=255)
                                                                                                  cgacgaGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGt                                                 >  3:283291/1‑149 (MQ=255)
                                                                                                    acgaGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGtgc                                               <  4:12908/149‑1 (MQ=255)
                                                                                                      gaGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCg                                                                                                        <  1:321337/90‑1 (MQ=255)
                                                                                                      gaGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCg                                                                                                        >  2:321337/1‑90 (MQ=255)
                                                                                                      gaGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGtgctg                                             >  1:51893/1‑149 (MQ=255)
                                                                                                         gCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGctgctg                                          >  7:302753/1‑149 (MQ=255)
                                                                                                            tCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTg                                       >  2:83095/1‑149 (MQ=255)
                                                                                                              cAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTgca                                     <  4:283291/149‑1 (MQ=255)
                                                                                                              cAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTgca                                     <  4:157661/148‑1 (MQ=255)
                                                                                                               aGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTgcag                                    >  4:256398/1‑149 (MQ=255)
                                                                                                                  gCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGcagcag                                 >  2:63074/1‑149 (MQ=255)
                                                                                                                   cACCGACGCCATTGCGCAGGCTACGACTGCGCTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAgg                                <  8:273528/149‑1 (MQ=255)
                                                                                                                   cACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCGGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAgg                                <  4:160642/149‑1 (MQ=255)
                                                                                                                         cGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCg                          <  1:83095/149‑1 (MQ=255)
                                                                                                                              ttGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTc                     <  3:256398/149‑1 (MQ=255)
                                                                                                                                 cgcAGGATAGGAATGCGGTCGCCATCAAGGCCGCGGATCACCGGGCTGCTGGCGCCAGGGCCTAACCAGGTAGAGGCGACACCGGTCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGctgctg                                          <  3:252243/125‑1 (MQ=255)
                                                                                                                                 cgcAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAAACAGGTTCAGGCGACACCGGGCTGCTTCTTAAGGGTTTCACCAAGGCTGACGTGctcctg                                          >  4:252243/1‑125 (MQ=255)
                                                                                                                                      gATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACgg             >  7:12163/1‑149 (MQ=255)
                                                                                                                                         aCGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCg                          <  7:199994/133‑1 (MQ=255)
                                                                                                                                         aCGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCg                          >  8:199994/1‑133 (MQ=255)
                                                                                                                                           gAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTg        >  5:220287/1‑149 (MQ=255)
                                                                                                                                                cGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTgctgct                                           >  2:151815/1‑109 (MQ=255)
                                                                                                                                                cGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTgctgct                                           <  1:151815/109‑1 (MQ=255)
                                                                                                                                                 ggTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGggcg  >  3:128108/1‑149 (MQ=255)
                                                                                                                                                 ggTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGACGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGggcg  >  1:209856/1‑149 (MQ=255)
                                                                                                                                                  gTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCg                    >  6:126340/1‑130 (MQ=255)
                                                                                                                                                  gTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCg                    <  5:126340/130‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
ATGGCGTTGCCGCCGTAAAGCAGGGCGGCCGGGCCACGGACGATTTCGACGCGCTCGACGGTTACCGGGTCCAGCGGCACGGCATGATCGTAGGACAGCGACGAGGCATCCAGGGCACCGACGCCATTGCGCAGGATACGAATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCG  >  NC_002947/1650638‑1650931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.