New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1935465 | 37 (0.730) | 3 (0.060) | 3/246 | NT | 8.1% | coding (730/936 nt) | htrB | lipid A biosynthesis lauroyl acyltransferase |
? | NC_002947 | = 1935502 | 33 (0.690) | coding (767/936 nt) | htrB | lipid A biosynthesis lauroyl acyltransferase |
CGATCTGGTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCAGTACCTGTGGGCGCACCG > NC_002947/1935319‑1935613 | cGATCTGGTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTg < 5:70568/149‑1 (MQ=255) cGATCTGGTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTg > 1:92994/1‑149 (MQ=255) tGGTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTggagga > 5:302692/1‑149 (MQ=255) gTACGCACCGGACCAGGACTACGGCGCCTAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTgga < 2:92994/144‑1 (MQ=255) gTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTggag < 8:90511/145‑1 (MQ=255) gTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATg > 3:94650/1‑149 (MQ=255) cACCGGACGAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACAGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGc < 8:149021/149‑1 (MQ=255) cGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGc < 7:295279/149‑1 (MQ=255) aCTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTg < 3:230079/149‑1 (MQ=255) gcCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCa < 6:204796/149‑1 (MQ=255) aaGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTg < 1:200748/138‑1 (MQ=255) aaGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTg > 2:200748/1‑138 (MQ=255) aGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCGCCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCg > 4:291425‑M2/1‑148 (MQ=255) agagCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCgccg > 4:94650‑M2/1‑145 (MQ=255) aTCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCgggtggatgaccagccgatagccgctgccatcctccagccgctttt < 1:37313‑M1/149‑47 (MQ=255) cTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCgggtggatgaccagccgatagccgctgccatcctccagccgcttttgg < 4:53125‑M1/149‑49 (MQ=255) ttCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGa < 2:272492/149‑1 (MQ=255) cGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCgggtggatgaccagccgatagccgctgccatcctccagccgcttttg < 7:46257‑M1/145‑48 (MQ=255) cGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACg < 7:1669/145‑1 (MQ=255) cGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCt > 6:79724/1‑118 (MQ=255) cGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCt < 5:79724/118‑1 (MQ=255) cGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTcccc > 2:199404/1‑149 (MQ=255) gttTGGCATCCCCGCGGCGACGGTGACCGCTACCACCTAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGAt < 4:44924/97‑1 (MQ=255) gttTGGCATCCCCGCGGCGACGGTGACCGCTACCACCGAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGAt > 3:44924/1‑97 (MQ=255) gcggcgACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGc < 4:147590/149‑1 (MQ=255) aCCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTgc < 6:302692/148‑1 (MQ=255) aCCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTgc < 5:77969/148‑1 (MQ=255) ccGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTGCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTCGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGAGAAGAGGCCGATTGCCTgcg > 1:299012/1‑148 (MQ=255) ccGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTgcg > 7:286928/1‑148 (MQ=255) cTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCAt > 2:56091/1‑148 (MQ=255) cTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATc < 1:56091/149‑1 (MQ=255) ccaAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGc < 7:230678/134‑1 (MQ=255) ccaAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGc > 8:230678/1‑134 (MQ=255) caAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAag < 8:15692/122‑1 (MQ=255) caAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAag > 7:15692/1‑122 (MQ=255) aGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATgg > 7:14442/1‑149 (MQ=255) gTTCGCCCGGGTGGGGAAGGCGCAGGTGAATCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATggg < 2:254279/149‑1 (MQ=255) aGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTgcgc < 1:199404/149‑1 (MQ=255) gTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGccc > 2:294958/1‑149 (MQ=255) ccGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGc < 1:294958/148‑1 (MQ=255) gTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATgg > 6:164148/1‑115 (MQ=255) gTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATgg < 5:164148/115‑1 (MQ=255) ttCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCgt < 7:219980/125‑1 (MQ=255) ttCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTACCCGGGGAAAGCCAAGAGGCCGATTGCCTGCGCATCAACAAATTGGTCGAGAGCgt > 8:219980/1‑125 (MQ=255) cccAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCAGTACCtg > 4:12025/1‑149 (MQ=255) ccAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCgccgcttttgggtgaacggaatcacctgcgccttccccaaccgggcgaacttggtggtagcggtcaccgtcgccgcggggatgccaaacaacggtacgaag < 4:53125‑M2/149‑102 (MQ=255) cAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCgccgcttttgggtgaacggaatcacctgcgccttccccaaccgggcgaacttggtggtagcggtcaccgtcgccgcggggatgccaaacaacggtacg < 7:46257‑M2/145‑99 (MQ=255) aaaaGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCgccgcttttgggtgaacggaatcacctgcgccttccccaaccgggcgaacttggtggtagcggtcaccgtcgccgcggggatgccaaacaacggtacgaagat < 1:37313‑M2/149‑104 (MQ=255) aaaaGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCAGTACCTGTgg < 8:286928/149‑1 (MQ=255) cggcgggtggatgaccagccgatagccgctgccatcctccagccgcttttgggtgaacggaatcacctgcgccttccccaaccgggcgaacttggtggtagcggtcaccgtcgccgcggggatgccaaacaacggtacgaagatgctct > 4:94650‑M1/1‑4 (MQ=255) cgggtggatgaccagccgatagccgctgccatcctccagccgcttttgggtgaacggaatcacctgcgccttccccaaccgggcgaacttggcggtagcggtcaccgtcgccgcggggatgccaaacaacggtacgaagatgctctgct > 4:291425‑M1/1‑1 (MQ=255) | CGATCTGGTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCAGTACCTGTGGGCGCACCG > NC_002947/1935319‑1935613 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |